Browse Element(s) Details


Os.40417.1.A1_at

Description gb:CF337705
DB_XREF= gi:33823797
DB_XREF=JMT--08-E07.g1
CLONE=JMT--08-E07
TID=Os.40417.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OSJNBb0056I06.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1474011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14700Os.31042.1.S1_at8/117+8380274..8381360Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14710OsAffx.22402.1.S1_at4/117+8390048..8391870transposon protein, putative, Mariner sub-class
LOC_Os07g14720OsAffx.22402.1.S1_at2/117+8392424..8393109hypothetical protein
LOC_Os07g14740Os.40417.1.A1_at11/117+8405063..8406024Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14740OsAffx.22756.1.S1_s_at1/117+8405063..8406024Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14750NANA7+8426615..842694760S acidic ribosomal protein P2, putative
LOC_Os07g14760OsAffx.22401.1.S1_x_at11/117+8428136..8429733hypothetical protein
LOC_Os07g14760OsAffx.29322.1.S1_x_at1/117+8428136..8429733hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40417.1.A1_at--1093--2751Chr07:8405588..8405612 (25 bp)
AAGACGGTGGTGTACAGGCTCTCCT
LOC_Os07g14740
Os.40417.1.A1_at--938--2891Chr07:8405456..8405480 (25 bp)
AAGGTGAGCTACACGGCGCGGATCA
LOC_Os07g14740
Os.40417.1.A1_at--176--2971Chr07:8405328..8405352 (25 bp)
CAAGGCCGAGAAGAACTGCTAGTTT
LOC_Os07g14740
Os.40417.1.A1_at--908--1431Chr07:8405317..8405341 (25 bp)
AGAACTGCTAGTTTAGTGCCAAAGT
LOC_Os07g14740
Os.40417.1.A1_at--71--10071Chr07:8405304..8405328 (25 bp)
TAGTGCCAAAGTAGCGGTTGTTGTT
LOC_Os07g14740
Os.40417.1.A1_at--1031--3211Chr07:8405227..8405251 (25 bp)
CAAGTGGTGATTGTTTAGTGCTACT
LOC_Os07g14740
Os.40417.1.A1_at--104--1131Chr07:8405211..8405235 (25 bp)
AGTGCTACTTGTGTATTGTGTGAGT
LOC_Os07g14740
Os.40417.1.A1_at--308--8671Chr07:8405195..8405219 (25 bp)
TGTGTGAGTGATGTCTTTTCCTGCA
LOC_Os07g14740
Os.40417.1.A1_at--873--8891Chr07:8405191..8405215 (25 bp)
TGAGTGATGTCTTTTCCTGCACAAA
LOC_Os07g14740
Os.40417.1.A1_at--585--9511Chr07:8405159..8405183 (25 bp)
TCTAATGTGCGGTTTAGTTTGGGTT
LOC_Os07g14740
Os.40417.1.A1_at--691--2131Chr07:8405108..8405132 (25 bp)
ACAGCTAAGCTAGCCGTTAGTTTGG
LOC_Os07g14740
Target Sequence 
AAGACGGTGGTGTACAGGCTCTCCTCCGGCAGCGACGCTGCCGCGGCGCCCGGCCTGGGCAACGCCGGCGTCGCCGAGTT
CAAGAAGGAGAACGCCACGGGGACGTTCGAGGTGGAGGTGGGGGTCACCGGCAAGGTGAGCTACACGGCGCGGATCACCA
AGTGCAAGATCGAGGCGACGTGCAAGCTCAAGCTGCAGCTCGCGCCGCCGGGGCAGGAGCCGGCGGCGGTGGTGTTCCAG
AAGGTCAAGTGCAAGCTCGCCAAGGCCGAGAAGAACTGCTAGTTTAGTGCCAAAGTAGCGGTTGTTGTTGCAATTGTGTT
AATTAATTTGGATATTTGTGCAATTGTGTTTAAATAATTTGCAAGTGGTGATTGTTTAGTGCTACTTGTGTATTGTGTGA
GTGATGTCTTTTCCTGCACAAAGTATTAATCTAATGTGCGGTTTAGTTTGGGTTAATTAGCTGTTCTAGTCAGGGGAGTG
ACAGCTAAGCTAGCCGTTAGTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40417.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis