Browse Element(s) Details


Os.40422.1.S1_at

Description gb:AK074018.1
DB_XREF= gi:32984041
TID=Os.40422.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075N03, full insert sequence.
FL= gb:AK074018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0230011/11Histone H2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02240Os.54675.1.S1_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02240Os.54675.1.S1_x_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02250Os.4876.1.S1_at10/115+694284..696884expressed protein
LOC_Os05g02260Os.5181.1.S1_a_at11/115+697176..699910expressed protein
LOC_Os05g02270NANA5+705991..707376Zinc knuckle family protein
LOC_Os05g02280NANA5+707738..710222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g02290NANA5+711891..713320hypothetical protein
LOC_Os05g02300Os.40422.1.S1_at11/115+716250..717121Histone H2A, putative, expressed
LOC_Os05g02310Os.10399.1.S1_at11/115+717700..721003Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os05g02320NANA5+726126..728596retrotransposon protein, putative, unclassified
LOC_Os05g02330NANA5+728926..730197retrotransposon protein, putative, unclassified
LOC_Os05g02340NANA5+730468..735045retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g02350OsAffx.14502.1.S1_at11/115+737050..741830Endonuclease/Exonuclease/phosphatase family protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40422.1.S1_at--722--4651Chr05:716822..716846 (25 bp)
GCGTCCAAGGACAAAGCCGCCAAGT
LOC_Os05g02300
Os.40422.1.S1_at--1021--9991Chr05:716870..716894 (25 bp)
TAGCTTCATGTCCTTCCATTCATTG
LOC_Os05g02300
Os.40422.1.S1_at--342--7271Chr05:716879..716903 (25 bp)
GTCCTTCCATTCATTGGTCACTGTA
LOC_Os05g02300
Os.40422.1.S1_at--822--6991Chr05:716910..716934 (25 bp)
GTACTTAGTTTGTTCGATTCGAGAT
LOC_Os05g02300
Os.40422.1.S1_at--690--6551Chr05:716932..716956 (25 bp)
GATTAGTTCGTATCACTAGGCATTT
LOC_Os05g02300
Os.40422.1.S1_at--430--7991Chr05:716961..716985 (25 bp)
GGATGTTTTCGATTTTAGCTTGCAA
LOC_Os05g02300
Os.40422.1.S1_at--304--1551Chr05:716977..717001 (25 bp)
AGCTTGCAAGACACTAGGGTAGTTC
LOC_Os05g02300
Os.40422.1.S1_at--310--2871Chr05:717015..717039 (25 bp)
AAGTGTCTCGCTTTGTCTTCTGGAT
LOC_Os05g02300
Os.40422.1.S1_at--723--10611Chr05:717032..717056 (25 bp)
TTCTGGATCCCATGTGCTTCAATAT
LOC_Os05g02300
Os.40422.1.S1_at--580--8691Chr05:717044..717068 (25 bp)
TGTGCTTCAATATGTGGTTTCTCAA
LOC_Os05g02300
Os.40422.1.S1_at--569--3091Chr05:717097..717121 (25 bp)
AATAGCCTGATTGTGAATCTGATCT
LOC_Os05g02300
Target Sequence 
GCGTCCAAGGACAAAGCCGCCAAGTCCCCCAAGAAGCAGGCGCGCTCCTAGCTTCATGTCCTTCCATTCATTGGTCACTG
TATATGNAGTACTTAGTTTGTTCGATTCGAGATTAGTTCGTATCACTAGGCATTTAACTGGATGTTTTCGATTTTAGCTT
GCAAGACACTAGGGTAGTTCTAATGAGAAGATGAAGTGTCTCGCTTTGTCTTCTGGATCCCATGTGCTTCAATATGTGGT
TTCTCAATTGAAATTTGTTTGTGTTCAGTAAGTTTAATAGCCTGATTGTGAATCTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis