Browse Element(s) Details


Os.40799.1.S1_at

Description gb:NM_193608.1
DB_XREF= gi:34914299
GEN=B1151A10.17
TID=Os.40799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40799 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative gamma hydroxybutyrate dehydrogenase (B1151A10.17), mRNA.
PROD=putative gamma hydroxybutyrate dehydrogenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3927010/11NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39220OsAffx.23571.1.S1_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39220OsAffx.23571.1.S1_x_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39230NANA1+22394645..22395088hypothetical protein
LOC_Os01g39250Os.12205.1.S1_at11/111+22401234..22406708ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39260Os.19618.1.S1_at11/111+22409139..22415086ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39270Os.16736.1.S1_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.16736.1.S1_s_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.40799.1.S1_at10/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39280Os.36435.2.S1_x_at11/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.1.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.2.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39290Os.52512.1.S1_at3/111+22425382..22426396Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40799.1.S1_at--37--451Chr01:22416274..22416380 (25 bp)
ATCTTTCCTTGAGCGATGCGATTTC
LOC_Os01g39270
Os.40799.1.S1_at--534--10291Chr01:22416271..22416377 (25 bp)
TTTCCTTGAGCGATGCGATTTCAGC
LOC_Os01g39270
Os.40799.1.S1_at--477--4631Chr01:22416262..22416286 (25 bp)
GCGATGCGATTTCAGCTCTTGTACT
LOC_Os01g39270
Os.40799.1.S1_at--1124--1571Chr01:22416249..22416273 (25 bp)
AGCTCTTGTACTGTTGGTCCAATGC
LOC_Os01g39270
Os.40799.1.S1_at--259--1971Chr01:22416240..22416264 (25 bp)
ACTGTTGGTCCAATGCTAACTCGAT
LOC_Os01g39270
Os.40799.1.S1_at--461--7271Chr01:22416233..22416257 (25 bp)
GTCCAATGCTAACTCGATACCTTTT
LOC_Os01g39270
Os.40799.1.S1_at--200--9091Chr01:22416227..22416251 (25 bp)
TGCTAACTCGATACCTTTTCAGTAG
LOC_Os01g39270
Os.40799.1.S1_at--299--6491Chr01:22416218..22416242 (25 bp)
GATACCTTTTCAGTAGGCTCCAGTT
LOC_Os01g39270
Os.40799.1.S1_at--800--10371Chr01:22416212..22416236 (25 bp)
TTTTCAGTAGGCTCCAGTTTCAGGC
LOC_Os01g39270
Os.40799.1.S1_at--1095--9531Chr01:22415907..22416180 (25 bp)
TCTTTCTTACCGCAGTCAAGATTTT
LOC_Os01g39270
Os.40799.1.S1_at--84--10571NONE
TTCTTACCGCAGTCAAGATTTTTCC
NONE
Target Sequence 
ATCTTTCCTTGAGCGATGCGATTTCAGCTCTTGTACTGTTGGTCCAATGCTAACTCGATACCTTTTCAGTAGGCTCCAGT
TTCAGGCTCAAAAAAGCCAGCAGAAGATGGGCTGCTCATCTTTCTTACCGCAGTCAAGATTTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis