Browse Element(s) Details


Os.4156.1.S1_at

Description gb:AB019533.1
DB_XREF= gi:4760552
TID=Os.4156.1
CNT=50
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.4156 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for Nad-dependent formate dehydrogenase, complete cds.
PROD=Nad-dependent formate dehydrogenase
FL= gb:AK065872.1 gb:AK104788.1 gb:AB019533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2918011/11Formate dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29130NANA6+16620600..16623913retrotransposon protein, putative, unclassified
LOC_Os06g29140NANA6+16624559..16630713retrotransposon protein, putative, unclassified
LOC_Os06g29150NANA6+16631497..16635968retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29160NANA6+16636474..16638467transposon protein, putative, unclassified
LOC_Os06g29170NANA6+16639068..16644642hypothetical protein
LOC_Os06g29180Os.4156.1.S1_at11/116+16648550..16652246Formate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g29180Os.14187.1.S1_at1/116+16648550..16652246Formate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g29190NANA6+16657544..16657780hypothetical protein
LOC_Os06g29200Os.28943.1.S1_x_at4/116+16664050..16667053retrotransposon protein, putative, unclassified
LOC_Os06g29210NANA6+16667675..16673638retrotransposon protein, putative, unclassified
LOC_Os06g29220Os.14187.1.S1_at10/116+16675495..16682026Formate dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0009611biological_processresponse to wounding
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4156.1.S1_at--485--911Chr06:16650652..16650676 (25 bp)
AGGCGGTTGCAGACGCTTGCTCTAG
LOC_Os06g29180
Os.4156.1.S1_at--792--4811Chr06:16650670..16650691 (22 bp)
GCTCTAGTGGTCAAGTTGCAGGATA
LOC_Os06g29180
Os.4156.1.S1_at--785--8371Chr06:16651186..16651210 (25 bp)
GGCGATACATGCCTAATCATGCCAT
LOC_Os06g29180
Os.4156.1.S1_at--1036--3511Chr06:16651208..16651232 (25 bp)
CATGACCCCTCATATCTCTGGGACT
LOC_Os06g29180
Os.4156.1.S1_at--305--6331Chr06:16651239..16651727 (25 bp)
GATGCACAGCTGAGATACGCAGCAG
LOC_Os06g29180
Os.4156.1.S1_at--524--9731Chr06:16651791..16651815 (25 bp)
TCAAGGAAGGTCAGCTCGCGAGCCA
LOC_Os06g29180
Os.4156.1.S1_at--978--4791Chr06:16651804..16651828 (25 bp)
GCTCGCGAGCCAGTACCAGTAATAA
LOC_Os06g29180
Os.4156.1.S1_at--1127--1151Chr06:16651821..16651845 (25 bp)
AGTAATAACCCTTCCTTGTGTGTTG
LOC_Os06g29180
Os.4156.1.S1_at--791--8811Chr06:16651841..16651865 (25 bp)
TGTTGGGTGTCCATCCTGTGGCCAC
LOC_Os06g29180
Os.4156.1.S1_at--729--8891Chr06:16651933..16651957 (25 bp)
TGAGTGTTCCCTGAGAAACTATTGG
LOC_Os06g29180
Os.4156.1.S1_at--450--9771Chr06:16651968..16651992 (25 bp)
TAATGGATGCCTGCCATGGCAACCA
LOC_Os06g29180
Target Sequence 
AGGCGGTTGCAGACGCTTGCTCTAGTGGTCAAGTTGCAGGATATGGTGGTGATGTCTGGTTCCCCCAACCAGCACCAAAG
GATCCACCCATTGGCGATACATGCCTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGCTGAGA
TACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGGGAAGACTTCCCGGTGCAGAACTACATCGTCAAGGA
AGGTCAGCTCGCGAGCCAGTACCAGTAATAACCCTTCCTTGTGTGTTGGGTGTCCATCCTGTGGCCACCTTCCCGCAGTG
AANGGGAAACAGAGATTCGGATAGGAACCAAAACANCCTTGTGTTGTTGTTGTTGCCNTGAGTGTTCCCTGAGAAACTAT
TGGACACCGGAAATAATGGATGCCTGCCATGGCAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis