Browse Element(s) Details


Os.4182.1.S1_at

Description gb:AB028129.1
DB_XREF= gi:4996639
TID=Os.4182.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4182 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for Dof zinc finger protein, complete cds.
PROD=Dof zinc finger protein
FL= gb:AB028129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4799011/11dof zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47950OsAffx.14321.1.S1_at11/114+28295409..28297032hypothetical protein
LOC_Os04g47960OsAffx.4119.1.S1_at10/114+28299184..28300682hypothetical protein
LOC_Os04g47970OsAffx.26512.1.S1_at11/114+28302787..28306558ORMDL family protein, expressed
LOC_Os04g47970Os.19300.1.S1_at10/114+28302787..28306558ORMDL family protein, expressed
LOC_Os04g47990Os.4182.2.S1_x_at11/114+28315203..28318450dof zinc finger protein, putative, expressed
LOC_Os04g47990Os.4182.1.S1_at11/114+28315203..28318450dof zinc finger protein, putative, expressed
LOC_Os04g48000OsAffx.14322.1.S1_at11/114+28338290..28338728hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0009639biological_processresponse to red or far red light
GO:0009845biological_processseed germination
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4182.1.S1_at--430--6771Chr04:28315756..28315780 (25 bp)
GTTACTACTAGTCATCGCTTGATCG
LOC_Os04g47990
Os.4182.1.S1_at--317--8671Chr04:28315728..28315752 (25 bp)
TGTGGTTAGAGAGCTGCATGCGTCA
LOC_Os04g47990
Os.4182.1.S1_at--294--4991Chr04:28315713..28315737 (25 bp)
GCATGCGTCAGTGCAGTACTAGACT
LOC_Os04g47990
Os.4182.1.S1_at--115--6951Chr04:28315687..28315711 (25 bp)
GTAGAGCATGGGAAGCTTCTTTTTA
LOC_Os04g47990
Os.4182.1.S1_at--380--10551Chr04:28315671..28315695 (25 bp)
TTCTTTTTAGGCTGGCTTCGAGTCC
LOC_Os04g47990
Os.4182.1.S1_at--186--10631Chr04:28315655..28315679 (25 bp)
TTCGAGTCCGATGGCGTGTACGTAC
LOC_Os04g47990
Os.4182.1.S1_at--724--8671Chr04:28315607..28315631 (25 bp)
TGTGTAGCTCATTGGTTTTGCAGGG
LOC_Os04g47990
Os.4182.1.S1_at--455--3531Chr04:28315512..28315536 (25 bp)
CATGCATGTATGTCAAACTTAGCTA
LOC_Os04g47990
Os.4182.1.S1_at--856--6851Chr04:28315426..28315450 (25 bp)
GTTTGCAGCTGATCTATGACTTTGT
LOC_Os04g47990
Os.4182.1.S1_at--774--1171Chr04:28315256..28315280 (25 bp)
AGTACTCCTACTATCTTATTGTTAT
LOC_Os04g47990
Os.4182.1.S1_at--951--351Chr04:28315216..28315240 (25 bp)
ATAATGCACATCTTTTTGCTCCTTG
LOC_Os04g47990
Target Sequence 
GTTACTACTAGTCATCGCTTGATCGATGTGTGGTTAGAGAGCTGCATGCGTCAGTGCAGTACTAGACTAGTAGAGCATGG
GAAGCTTCTTTTTAGGCTGGCTTCGAGTCCGATGGCGTGTACGTACGTGGTACANAGGCATGCATGTGGTGTGTAGCTCA
TTGGTTTTGCAGGGGCATTGTGAAGCGAAGGATGAAGGGAAGGACTCGGTTGGGGAGGAAGAAAGAAAAATGGACCCCCA
TCACCATGCATGTATGTCAAACTTAGCTACAGTATGTTTGGTAACNGGCAANTGCATCAAGCTTTTGGTTGTAGATGTAG
ATCTTGGGAAGGGTTTGCAGCTGATCTATGACTTTGTGTTGATCCANNAACANNGTAGTGATTCCATCCTTNTTCTAGCT
TAACTTGTTATTGTTGTTAACTTCTATGGGATGTGTAGAGGTCATATAAAGTTATAGTAGTAGTAGTTNCAAAAGGGNTT
TTTGAGCGCATGTAATTTAATTTGTATAGTACTCCTACTATCTTATTGTTATATTTACAGCCAAACTATAATGCACATCT
TTTTGCTCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis