Browse Element(s) Details


OsAffx.26512.1.S1_at

Description tigr:9632.m04640
TID=OsAffx.26512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ORMDL family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4797011/11ORMDL family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47920OsAffx.4118.1.S1_at11/114+28278967..28279242hypothetical protein
LOC_Os04g47930Os.56757.1.S1_at9/114+28280903..28283389Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os04g47940NANA4+28287793..28288194transposon protein, putative, unclassified
LOC_Os04g47950OsAffx.14321.1.S1_at11/114+28295409..28297032hypothetical protein
LOC_Os04g47960OsAffx.4119.1.S1_at10/114+28299184..28300682hypothetical protein
LOC_Os04g47970OsAffx.26512.1.S1_at11/114+28302787..28306558ORMDL family protein, expressed
LOC_Os04g47970Os.19300.1.S1_at10/114+28302787..28306558ORMDL family protein, expressed
LOC_Os04g47990Os.4182.2.S1_x_at11/114+28315203..28318450dof zinc finger protein, putative, expressed
LOC_Os04g47990Os.4182.1.S1_at11/114+28315203..28318450dof zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26512.1.S1_at--479--10491Chr04:28304626..28304650 (25 bp)
TTCCTTTGGTCCTGTAAGAATAAAT
LOC_Os04g47970
OsAffx.26512.1.S1_at--832--7791Chr04:28304633..28304657 (25 bp)
GGTCCTGTAAGAATAAATCTGTTGC
LOC_Os04g47970
OsAffx.26512.1.S1_at--277--2731Chr04:28304641..28304665 (25 bp)
AAGAATAAATCTGTTGCGATTGATT
LOC_Os04g47970
OsAffx.26512.1.S1_at--1081--6531Chr04:28304662..28304686 (25 bp)
GATTTTCCTTTTCACTACAGCATTG
LOC_Os04g47970
OsAffx.26512.1.S1_at--589--10391Chr04:28304664..28304688 (25 bp)
TTTTCCTTTTCACTACAGCATTGAA
LOC_Os04g47970
OsAffx.26512.1.S1_at--1009--6591Chr04:28304701..28304725 (25 bp)
GATTGATTCTACATAGCCAGTAAGT
LOC_Os04g47970
OsAffx.26512.1.S1_at--550--7051Chr04:28304727..28304751 (25 bp)
GTAACTAGTAAATGGTTTCAGACTT
LOC_Os04g47970
OsAffx.26512.1.S1_at--668--10331Chr04:28304742..28304766 (25 bp)
TTTCAGACTTTCAGTAGGTATGCAA
LOC_Os04g47970
OsAffx.26512.1.S1_at--400--5691Chr04:28304747..28304771 (25 bp)
GACTTTCAGTAGGTATGCAAGGAAT
LOC_Os04g47970
OsAffx.26512.1.S1_at--407--5171Chr04:28304763..28304787 (25 bp)
GCAAGGAATTAACATATAGCTCTGA
LOC_Os04g47970
OsAffx.26512.1.S1_at--932--3571Chr04:28304775..28304799 (25 bp)
CATATAGCTCTGATGTTTGTTACCG
LOC_Os04g47970
Target Sequence 
TTCCTTTGGTCCTGTAAGAATAAATCTGTTGCGATTGATTTTCCTTTTCACTACAGCATTGAAAATATGGATGATGATTG
ATTCTACATAGCCAGTAAGTAGTAACTAGTAAATGGTTTCAGACTTTCAGTAGGTATGCAAGGAATTAACATATAGCTCT
GATGTTTGTTACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis