Browse Element(s) Details


OsAffx.4118.1.S1_at

Description tigr:9632.m04635
TID=OsAffx.4118.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4792011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47890Os.54093.1.S1_at11/114+28251283..28255169myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g47900Os.55683.1.S1_at11/114+28260402..28261253expressed protein
LOC_Os04g47906OsAffx.26511.1.S1_x_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906OsAffx.26511.1.S1_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906Os.51033.1.S1_at10/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47912Os.53375.1.S1_at11/114+28270308..28275324expressed protein
LOC_Os04g47920OsAffx.4118.1.S1_at11/114+28278967..28279242hypothetical protein
LOC_Os04g47930Os.56757.1.S1_at9/114+28280903..28283389Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os04g47940NANA4+28287793..28288194transposon protein, putative, unclassified
LOC_Os04g47950OsAffx.14321.1.S1_at11/114+28295409..28297032hypothetical protein
LOC_Os04g47960OsAffx.4119.1.S1_at10/114+28299184..28300682hypothetical protein
LOC_Os04g47970OsAffx.26512.1.S1_at11/114+28302787..28306558ORMDL family protein, expressed
LOC_Os04g47970Os.19300.1.S1_at10/114+28302787..28306558ORMDL family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4118.1.S1_at--1158--5171Chr04:28279004..28279028 (25 bp)
GAAGGGATGAAGGACTAAACCCCAT
LOC_Os04g47920
OsAffx.4118.1.S1_at--318--7651Chr04:28279007..28279031 (25 bp)
GGGATGAAGGACTAAACCCCATCTC
LOC_Os04g47920
OsAffx.4118.1.S1_at--181--6311Chr04:28279009..28279033 (25 bp)
GATGAAGGACTAAACCCCATCTCCA
LOC_Os04g47920
OsAffx.4118.1.S1_at--570--651Chr04:28279010..28279034 (25 bp)
ATGAAGGACTAAACCCCATCTCCAT
LOC_Os04g47920
OsAffx.4118.1.S1_at--183--8991Chr04:28279011..28279035 (25 bp)
TGAAGGACTAAACCCCATCTCCATC
LOC_Os04g47920
OsAffx.4118.1.S1_at--616--571Chr04:28279033..28279057 (25 bp)
ATCCAACGCAAACTCCCACCAAGTC
LOC_Os04g47920
OsAffx.4118.1.S1_at--340--9831Chr04:28279145..28279169 (25 bp)
TAAAAGGAAGGGATGGCCCTAGCCA
LOC_Os04g47920
OsAffx.4118.1.S1_at--28--5331Chr04:28279151..28279175 (25 bp)
GAAGGGATGGCCCTAGCCAACGTCA
LOC_Os04g47920
OsAffx.4118.1.S1_at--1060--2871Chr04:28279152..28279176 (25 bp)
AAGGGATGGCCCTAGCCAACGTCAT
LOC_Os04g47920
OsAffx.4118.1.S1_at--884--7631Chr04:28279154..28279178 (25 bp)
GGGATGGCCCTAGCCAACGTCATCG
LOC_Os04g47920
OsAffx.4118.1.S1_at--897--1731Chr04:28279181..28279205 (25 bp)
ACCATTGCCCACCATGTACGCTGAC
LOC_Os04g47920
Target Sequence 
GAAGGGATGAAGGACTAAACCCCATCTCCATCCAACGCAAACTCCCACCAAGTCCACCGTTGCCCCAGTCCTCGTCGTCG
GTGACGGAGGAAGGGACGGGGGACTACCCCCATCTCTGCTGCCCACCAAATCCGCCGATGATAAAAGGAAGGGATGGCCC
TAGCCAACGTCATCGCCACCATTGCCCACCATGTACGCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis