Browse Element(s) Details


Os.53375.1.S1_at

Description gb:AK072344.1
DB_XREF= gi:32982367
TID=Os.53375.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049A03, full insert sequence.
FL= gb:AK072344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4791211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47890Os.54093.1.S1_at11/114+28251283..28255169myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g47900Os.55683.1.S1_at11/114+28260402..28261253expressed protein
LOC_Os04g47906OsAffx.26511.1.S1_x_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906OsAffx.26511.1.S1_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906Os.51033.1.S1_at10/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47912Os.53375.1.S1_at11/114+28270308..28275324expressed protein
LOC_Os04g47920OsAffx.4118.1.S1_at11/114+28278967..28279242hypothetical protein
LOC_Os04g47930Os.56757.1.S1_at9/114+28280903..28283389Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os04g47940NANA4+28287793..28288194transposon protein, putative, unclassified
LOC_Os04g47950OsAffx.14321.1.S1_at11/114+28295409..28297032hypothetical protein
LOC_Os04g47960OsAffx.4119.1.S1_at10/114+28299184..28300682hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53375.1.S1_at--1161--4871Chr04:28270515..28270539 (25 bp)
GCTATTGACAAGTGCATTATACAAG
LOC_Os04g47912
Os.53375.1.S1_at--968--5331Chr04:28270491..28270515 (25 bp)
GAAGTTTTGCTGCAGTATCCTTGTG
LOC_Os04g47912
Os.53375.1.S1_at--1117--5011Chr04:28270480..28270504 (25 bp)
GCAGTATCCTTGTGGTTTTCCTACA
LOC_Os04g47912
Os.53375.1.S1_at--1072--7471Chr04:28270469..28270493 (25 bp)
GTGGTTTTCCTACAATTTTGTCTTG
LOC_Os04g47912
Os.53375.1.S1_at--907--10251Chr04:28270453..28270477 (25 bp)
TTTGTCTTGGTATATTGCTGCTGGT
LOC_Os04g47912
Os.53375.1.S1_at--563--9111Chr04:28270438..28270462 (25 bp)
TGCTGCTGGTATTCTTTTCAAGTCT
LOC_Os04g47912
Os.53375.1.S1_at--602--111Chr04:28270428..28270452 (25 bp)
ATTCTTTTCAAGTCTGGGCATTATT
LOC_Os04g47912
Os.53375.1.S1_at--256--10211Chr04:28270368..28270392 (25 bp)
TATTTTTCCTTGTTCTAGCGTTTTG
LOC_Os04g47912
Os.53375.1.S1_at--734--3711Chr04:28270354..28270378 (25 bp)
CTAGCGTTTTGGTACCTCATTTTCT
LOC_Os04g47912
Os.53375.1.S1_at--886--10851Chr04:28270346..28270370 (25 bp)
TTGGTACCTCATTTTCTTGTGAAAT
LOC_Os04g47912
Os.53375.1.S1_at--329--2251Chr04:28270325..28270349 (25 bp)
AAATTTTTGGTATTGCATGATGCTA
LOC_Os04g47912
Target Sequence 
GCTATTGACAAGTGCATTATACAAGAAGTTTTGCTGCAGTATCCTTGTGGTTTTCCTACAATTTTGTCTTGGTATATTGC
TGCTGGTATTCTTTTCAAGTCTGGGCATTATTTTTTTCTTGTTTTAATTTATTATAGTTTTGAACTATATTTTTCCTTGT
TCTAGCGTTTTGGTACCTCATTTTCTTGTGAAATTTTTGGTATTGCATGATGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis