Browse Element(s) Details


Os.54093.1.S1_at

Description gb:AK101849.1
DB_XREF= gi:32987058
TID=Os.54093.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069K05, full insert sequence.
FL= gb:AK101849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4789011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47890Os.54093.1.S1_at11/114+28251283..28255169myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g47900Os.55683.1.S1_at11/114+28260402..28261253expressed protein
LOC_Os04g47906OsAffx.26511.1.S1_x_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906OsAffx.26511.1.S1_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906Os.51033.1.S1_at10/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47912Os.53375.1.S1_at11/114+28270308..28275324expressed protein
LOC_Os04g47920OsAffx.4118.1.S1_at11/114+28278967..28279242hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54093.1.S1_at--1066--1451Chr04:28254692..28254716 (25 bp)
AGAAGTGCACCATCTTGGTCCCGTG
LOC_Os04g47890
Os.54093.1.S1_at--3--8611Chr04:28254707..28254731 (25 bp)
TGGTCCCGTGTTGAAGCTGCAATGC
LOC_Os04g47890
Os.54093.1.S1_at--704--2491Chr04:28254744..28254768 (25 bp)
AACAGTGGATTCATCTCCAGCAGCA
LOC_Os04g47890
Os.54093.1.S1_at--463--3911Chr04:28254807..28254831 (25 bp)
CTGGAGAAATGTTCGCTGTCACTCT
LOC_Os04g47890
Os.54093.1.S1_at--344--7591Chr04:28254933..28254957 (25 bp)
GGGAACTCAGGTTGTCTTGTTGCCC
LOC_Os04g47890
Os.54093.1.S1_at--43--8771Chr04:28254950..28254974 (25 bp)
TGTTGCCCCGGGTGTGAACTTGGAA
LOC_Os04g47890
Os.54093.1.S1_at--277--7271Chr04:28254983..28255007 (25 bp)
GTCCATCTGTGGATCTTAGACCTTG
LOC_Os04g47890
Os.54093.1.S1_at--762--10031Chr04:28254999..28255023 (25 bp)
TAGACCTTGGTTCCAGTAATCCAGT
LOC_Os04g47890
Os.54093.1.S1_at--1061--3011Chr04:28255016..28255040 (25 bp)
AATCCAGTTTTTGTACATCAGTCAG
LOC_Os04g47890
Os.54093.1.S1_at--222--411Chr04:28255032..28255056 (25 bp)
ATCAGTCAGTCTCACATGTCGGTTT
LOC_Os04g47890
Os.54093.1.S1_at--225--5471Chr04:28255058..28255082 (25 bp)
GAACTTTTAATCACCTGCTTCAGTG
LOC_Os04g47890
Target Sequence 
AGAAGTGCACCATCTTGGTCCCGTGTTGAAGCTGCAATGCTCCAAGGTGGAGAACAGTGGATTCATCTCCAGCAGCACCG
GCACGGCTGCAAGGGATCAACCGGAGCCGCCGCCGCTGGAGAAATGTTCGCTGTCACTCTCCCTCGGTCCAGACCCCAAA
TGCATGCCGGCGATCGCCTCGTCGCCGAGCGAAAGCAGCTGCATCCTCTCGTCGTCGTCCAGGAGCTTCAGCGACTGCTC
CGGGAACTCAGGTTGTCTTGTTGCCCCGGGTGTGAACTTGGAACTCTCCATGTCCATCTGTGGATCTTAGACCTTGGTTC
CAGTAATCCAGTTTTTGTACATCAGTCAGTCTCACATGTCGGTTTTGAACTTTTAATCACCTGCTTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis