Browse Element(s) Details


Os.51033.1.S1_at

Description gb:AK060279.1
DB_XREF= gi:32970297
TID=Os.51033.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-006-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-A07, full insert sequence.
FL= gb:AK060279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4790610/11Gamma-tubulin complex component 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47890Os.54093.1.S1_at11/114+28251283..28255169myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g47900Os.55683.1.S1_at11/114+28260402..28261253expressed protein
LOC_Os04g47906OsAffx.26511.1.S1_x_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906OsAffx.26511.1.S1_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906Os.51033.1.S1_at10/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47912Os.53375.1.S1_at11/114+28270308..28275324expressed protein
LOC_Os04g47920OsAffx.4118.1.S1_at11/114+28278967..28279242hypothetical protein
LOC_Os04g47930Os.56757.1.S1_at9/114+28280903..28283389Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os04g47940NANA4+28287793..28288194transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015631molecular_functiontubulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51033.1.S1_at--1149--2331Chr04:28265442..28265466 (25 bp)
AAAGCTCAAGTATCCCCTTTATCTT
LOC_Os04g47906
Os.51033.1.S1_at--503--8311Chr04:28265413..28265437 (25 bp)
GGCTAGCTTGCCTTTTACAACAATT
LOC_Os04g47906
Os.51033.1.S1_at--898--6311Chr04:28265387..28265411 (25 bp)
GATGACAGCATGTTCTGCCTTTGAT
LOC_Os04g47906
Os.51033.1.S1_at--257--3831Chr04:28265373..28265397 (25 bp)
CTGCCTTTGATTGTACTGCTAGTAA
LOC_Os04g47906
Os.51033.1.S1_at--860--5351Chr04:28265348..28265372 (25 bp)
GAAGAGGTGCATCCCTTTGGTCTGC
LOC_Os04g47906
Os.51033.1.S1_at--544--3071Chr04:28265321..28265345 (25 bp)
AATCAGTTCACATTTTGCACCCTCG
LOC_Os04g47906
Os.51033.1.S1_at--395--5091Chr04:28265305..28265329 (25 bp)
GCACCCTCGGTGACACAGGTATGTT
LOC_Os04g47906
Os.51033.1.S1_at--502--10131Chr04:28265258..28265282 (25 bp)
TATGCATCACTAGAGCACGCTGCTG
LOC_Os04g47906
Os.51033.1.S1_at--1090--9451NONE
TCTCGTTTCCCTTCATTTCGGAAAG
NONE
Os.51033.1.S1_at--1050--971Chr04:28265205..28265229 (25 bp)
AGGAGGAACACACTGCTAGTCTGCT
LOC_Os04g47906
Os.51033.1.S1_at--505--7071Chr04:28264963..28264987 (25 bp)
GTAATCTGAGACATGGCCTGGTAAA
LOC_Os04g47906
Target Sequence 
AAAGCTCAAGTATCCCCTTTATCTTCTGTGGCTAGCTTGCCTTTTACAACAATTTGATGACAGCATGTTCTGCCTTTGAT
TGTACTGCTAGTAAGAAGAGGTGCATCCCTTTGGTCTGCTCAATCAGTTCACATTTTGCACCCTCGGTGACACAGGTATG
TTTGTACAATTGTCTGTTTCTGAATATGCATCACTAGAGCACGCTGCTGAGGCTTCTCGTTTCCCTTCATTTCGGAAAGG
AGGAACACACTGCTAGTCTGCTACCATCGCAGAGCATGAACTTACCTGAAGACAGTAGTTCCTTGTATGAACTTTCCTGA
AGTAATAGTGATCTTTAGAGTTTGAGCATTGTATGGAGTTTTCACTTGATAGAATAGTGGTTTTGTGGAAAATACGAGGC
TAGGAATGAACTTCAAACATCCAATTAAAAGGAAAAAAAAATTGACGTGACTGGGAATGCATGTTACTATTGTATAGCTG
TAATCTGAGACATGGCCTGGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis