Browse Element(s) Details


Os.56757.1.S1_at

Description gb:AK110383.1
DB_XREF= gi:32995592
TID=Os.56757.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-165-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-165-D04, full insert sequence.
FL= gb:AK110383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g479309/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47900Os.55683.1.S1_at11/114+28260402..28261253expressed protein
LOC_Os04g47906OsAffx.26511.1.S1_x_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906OsAffx.26511.1.S1_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906Os.51033.1.S1_at10/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47912Os.53375.1.S1_at11/114+28270308..28275324expressed protein
LOC_Os04g47920OsAffx.4118.1.S1_at11/114+28278967..28279242hypothetical protein
LOC_Os04g47930Os.56757.1.S1_at9/114+28280903..28283389Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os04g47940NANA4+28287793..28288194transposon protein, putative, unclassified
LOC_Os04g47950OsAffx.14321.1.S1_at11/114+28295409..28297032hypothetical protein
LOC_Os04g47960OsAffx.4119.1.S1_at10/114+28299184..28300682hypothetical protein
LOC_Os04g47970OsAffx.26512.1.S1_at11/114+28302787..28306558ORMDL family protein, expressed
LOC_Os04g47970Os.19300.1.S1_at10/114+28302787..28306558ORMDL family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56757.1.S1_at--679--6351Chr04:28281452..28281476 (25 bp)
GATGCCAAGCTGCAAACCGTGAGCG
LOC_Os04g47930
Os.56757.1.S1_at--1127--8911Chr04:28281433..28281457 (25 bp)
TGAGCGATCACGTCACGGTCGAACC
LOC_Os04g47930
Os.56757.1.S1_at--823--4771Chr04:28281395..28281419 (25 bp)
GCTGCGGCTCGGACAACAAAGAACA
LOC_Os04g47930
Os.56757.1.S1_at--621--4071Chr04:28281330..28281354 (25 bp)
CGAGTCGATCGAACCGGGCAGATTA
LOC_Os04g47930
Os.56757.1.S1_at--88--6571Chr04:28281310..28281334 (25 bp)
GATTAAGCCGGTTCTCGATGGGTTT
LOC_Os04g47930
Os.56757.1.S1_at--526--2431NONE
AAAACCTTGATCACTGTTGGCTCAG
NONE
Os.56757.1.S1_at--940--7071Chr04:28281103..28281127 (25 bp)
GTCAATACGGCATTGTGGCTTTCAT
LOC_Os04g47930
Os.56757.1.S1_at--751--1631Chr04:28281057..28281081 (25 bp)
AGCGTCAAATCCATGTTAGTGCGTT
LOC_Os04g47930
Os.56757.1.S1_at--137--3471Chr04:28280960..28280984 (25 bp)
CAGGGCCTGTCATATATGGTCGTCA
LOC_Os04g47930
Os.56757.1.S1_at--761--811Chr04:28280945..28280969 (25 bp)
ATGGTCGTCATGCACGCACCATTTT
LOC_Os04g47930
Os.56757.1.S1_at--743--3551NONE
CATTTTCTTTCTCTAACCACAGTAC
NONE
Target Sequence 
GATGCCAAGCTGCAAACCGTGAGCGATCACGTCACGGTCGAACCGGAAGCGGCTGCGGCTGCGGCTCGGACAACAAAGAA
CATTGAACAAGTTTAAACCGGTTCACGTCAAAATCCAACGAACGAGTCGATCGAACCGGGCAGATTAAGCCGGTTCTCGA
TGGGTTTCGTCACTCCCGCACCATATGCCACTTCCAAGCGGCAACCGGTCCGAGTGGCCGAGTCAGAGTGGGGAATAAAA
AAGCAATCGCCGTAAAACCTTGATCACTGTTGGCTCAGAGGAAAAGTTGACACATGCAGATAGCATCAAGGAGAAATGGG
GAATAAAAAAGCTCACTTATCATAAAGTTGTCAATACGGCATTGTGGCTTTCATGCCATGAATGTAGGCACGTATAGCGT
CAAATCCATGTTAGTGCGTTGTTATTTTTAATTATACCAGATAACCAGAATGTTATTTGATCTGATCCCATATAGGAGCA
GGAAAGAAAGTTCAGGGCCTGTCATATATGGTCGTCATGCACGCACCATTTTCTTTCTCTAACCACAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis