Browse Element(s) Details


OsAffx.14322.1.S1_at

Description tigr:9632.m04645
TID=OsAffx.14322.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4800011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47990Os.4182.2.S1_x_at11/114+28315203..28318450dof zinc finger protein, putative, expressed
LOC_Os04g47990Os.4182.1.S1_at11/114+28315203..28318450dof zinc finger protein, putative, expressed
LOC_Os04g48000OsAffx.14322.1.S1_at11/114+28338290..28338728hypothetical protein
LOC_Os04g48010Os.54349.1.S1_at10/114+28344724..28348693WD-40 repeat family protein, putative, expressed
LOC_Os04g48020NANA4+28354009..283547886-phospho 3-hexuloisomerase, putative, expressed
LOC_Os04g48030Os.50642.1.S1_at11/114+28355306..28356595HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14322.1.S1_at--218--3051Chr04:28338670..28338694 (25 bp)
AATCGAATCGTAGTCCCTGCTCATG
LOC_Os04g48000
OsAffx.14322.1.S1_at--634--3031Chr04:28338665..28338689 (25 bp)
AATCGTAGTCCCTGCTCATGTAGGG
LOC_Os04g48000
OsAffx.14322.1.S1_at--790--7551Chr04:28338641..28338665 (25 bp)
GGGCCTAACAAACTCACACGTCGCA
LOC_Os04g48000
OsAffx.14322.1.S1_at--229--2471Chr04:28338636..28338659 (24 bp)
AACAAACTCACACGTCGCATCACGA
LOC_Os04g48000
OsAffx.14322.1.S1_at--217--3571Chr04:28338386..28338642 (25 bp)
CATCACGAGCCAGAGTAGCATAGTA
LOC_Os04g48000
OsAffx.14322.1.S1_at--1024--6071Chr04:28338374..28338398 (25 bp)
GAGTAGCATAGTATTAGCGCACGAA
LOC_Os04g48000
OsAffx.14322.1.S1_at--795--10211Chr04:28338363..28338387 (25 bp)
TATTAGCGCACGAAGCTGCCTGGCA
LOC_Os04g48000
OsAffx.14322.1.S1_at--124--8511Chr04:28338343..28338367 (25 bp)
TGGCACCCAGGCATGGGCGTAAACA
LOC_Os04g48000
OsAffx.14322.1.S1_at--915--791Chr04:28338331..28338355 (25 bp)
ATGGGCGTAAACAACTCGCGTACTC
LOC_Os04g48000
OsAffx.14322.1.S1_at--855--9811Chr04:28338324..28338348 (25 bp)
TAAACAACTCGCGTACTCTACAGTC
LOC_Os04g48000
OsAffx.14322.1.S1_at--1120--3011Chr04:28338320..28338344 (25 bp)
CAACTCGCGTACTCTACAGTCTACT
LOC_Os04g48000
Target Sequence 
AATCGAATCGTAGTCCCTGCTCATGTAGGGGGCCTAACAAACTCACACGTCGCATCACGAGCCAGAGTAGCATAGTATTA
GCGCACGAAGCTGCCTGGCACCCAGGCATGGGCGTAAACAACTCGCGTACTCTACAGTCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis