Browse Element(s) Details


Os.50642.1.S1_at

Description gb:AY344483.1
DB_XREF= gi:33591095
TID=Os.50642.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50642 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds.
PROD=heat shock factor RHSF1
FL= gb:AY344483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4803011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48000OsAffx.14322.1.S1_at11/114+28338290..28338728hypothetical protein
LOC_Os04g48010Os.54349.1.S1_at10/114+28344724..28348693WD-40 repeat family protein, putative, expressed
LOC_Os04g48020NANA4+28354009..283547886-phospho 3-hexuloisomerase, putative, expressed
LOC_Os04g48030Os.50642.1.S1_at11/114+28355306..28356595HSF-type DNA-binding domain containing protein, expressed
LOC_Os04g48040Os.54712.1.S1_at11/114+28364356..28369174expressed protein
LOC_Os04g48050Os.13882.1.S1_at11/114+28372844..28376629zinc finger family protein, putative, expressed
LOC_Os04g48060Os.13010.1.S1_a_at11/114+28378208..28381195Activator 1 40 kDa subunit, putative, expressed
LOC_Os04g48070Os.8833.1.S1_at11/114+28381594..28387933homeobox protein OCL1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50642.1.S1_at--946--9411Chr04:28356056..28356080 (25 bp)
TCGTGTCGCGGTACGACCACGACCA
LOC_Os04g48030
Os.50642.1.S1_at--508--4051Chr04:28356140..28356164 (25 bp)
CGATCGGCGGCAAAAGATCGCGCGA
LOC_Os04g48030
Os.50642.1.S1_at--596--8911Chr04:28356387..28356411 (25 bp)
TGACCGCAAGAGCTCGGTCTCGTAA
LOC_Os04g48030
Os.50642.1.S1_at--471--1591Chr04:28356397..28356421 (25 bp)
AGCTCGGTCTCGTAACGGTTGTTGA
LOC_Os04g48030
Os.50642.1.S1_at--281--1931Chr04:28356411..28356435 (25 bp)
ACGGTTGTTGACTTGCTGTTGATTT
LOC_Os04g48030
Os.50642.1.S1_at--249--4751Chr04:28356425..28356449 (25 bp)
GCTGTTGATTTTATATGCGGCGTAA
LOC_Os04g48030
Os.50642.1.S1_at--51--8251Chr04:28356467..28356491 (25 bp)
GGCACATGAGCCAAATTGAATTGTA
LOC_Os04g48030
Os.50642.1.S1_at--544--5191Chr04:28356484..28356508 (25 bp)
GAATTGTAGTTCGTACCAGTACCAA
LOC_Os04g48030
Os.50642.1.S1_at--1146--6691Chr04:28356492..28356516 (25 bp)
GTTCGTACCAGTACCAAGCAAACTG
LOC_Os04g48030
Os.50642.1.S1_at--811--2551Chr04:28356512..28356536 (25 bp)
AACTGCAGCCACTTTACAGGGTACT
LOC_Os04g48030
Os.50642.1.S1_at--1084--9851Chr04:28356526..28356550 (25 bp)
TACAGGGTACTAAACTATACTTTCG
LOC_Os04g48030
Target Sequence 
TCGTGTCGCGGTACGACCACGACCACGGCGGCGGGGAGGAGGAAGCGGGGGAGGGCGACGTGAAGCCGATGCTGTTCGGC
GTGGCGATCGGCGGCAAAAGATCGCGCGAGGAGAACGGGGAAGACGAGGAGGAGGAGGAGGAGGAAGGGGCTGACGAGGA
CGGCGAAGACGATGAGGTGGAGGAAGACGACGAGGAGAGAGAGAGGCACGCGGCGCGGCGGGTCCCCGTGAGGGAGGGGA
AGGTCAGGAGGACGACGGAGCTGTCGGATCTGGACGTGCTCGCGCTGTCCGTGCGGGCGGCGGCCGCGGCGAGGCCGGGC
GGGGCCTCCCGTGACCGCAAGAGCTCGGTCTCGTAACGGTTGTTGACTTGCTGTTGATTTTATATGCGGCGTAAAACTGA
GAAAATTGGATGGCACATGAGCCAAATTGAATTGTAGTTCGTACCAGTACCAAGCAAACTGCAGCCACTTTACAGGGTAC
TAAACTATACTTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis