Browse Element(s) Details


Os.13882.1.S1_at

Description gb:AK070267.1
DB_XREF= gi:32980291
TID=Os.13882.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20115 ring zinc finger protein-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044P07, full insert sequence.
FL= gb:AK070267.1 gb:AY224421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4805011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48010Os.54349.1.S1_at10/114+28344724..28348693WD-40 repeat family protein, putative, expressed
LOC_Os04g48020NANA4+28354009..283547886-phospho 3-hexuloisomerase, putative, expressed
LOC_Os04g48030Os.50642.1.S1_at11/114+28355306..28356595HSF-type DNA-binding domain containing protein, expressed
LOC_Os04g48040Os.54712.1.S1_at11/114+28364356..28369174expressed protein
LOC_Os04g48050Os.13882.1.S1_at11/114+28372844..28376629zinc finger family protein, putative, expressed
LOC_Os04g48060Os.13010.1.S1_a_at11/114+28378208..28381195Activator 1 40 kDa subunit, putative, expressed
LOC_Os04g48070Os.8833.1.S1_at11/114+28381594..28387933homeobox protein OCL1, putative, expressed
LOC_Os04g48080Os.28943.1.S1_x_at3/114+28396670..28399904retrotransposon protein, putative, unclassified
LOC_Os04g48094NANA4+28400530..28414102retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13882.1.S1_at--341--6591Chr04:28373337..28373361 (25 bp)
GATTGTGTGAATATCCTCCGGTCGA
LOC_Os04g48050
Os.13882.1.S1_at--416--5971Chr04:28373314..28373338 (25 bp)
GAGAACACCGATCCATTTCAACTTC
LOC_Os04g48050
Os.13882.1.S1_at--1020--10511Chr04:28373292..28373316 (25 bp)
TTCACACCTGTCTCTGCTAATGCAA
LOC_Os04g48050
Os.13882.1.S1_at--858--2011Chr04:28373197..28373221 (25 bp)
ACTCAAGACTGCTGTTCATATCCAC
LOC_Os04g48050
Os.13882.1.S1_at--819--3191Chr04:28373159..28373183 (25 bp)
CAATGTGTCTTTTACTGTCCGGAAT
LOC_Os04g48050
Os.13882.1.S1_at--1100--10331Chr04:28373128..28373152 (25 bp)
TTAGTTGCCCCGTGAGTTGTAATTC
LOC_Os04g48050
Os.13882.1.S1_at--1053--6631Chr04:28373113..28373137 (25 bp)
GTTGTAATTCTTCGAGTGATCCTCA
LOC_Os04g48050
Os.13882.1.S1_at--27--831Chr04:28373068..28373092 (25 bp)
ATGGTTTGTGCTTATGCTCCTGCCT
LOC_Os04g48050
Os.13882.1.S1_at--1074--2971Chr04:28373012..28373036 (25 bp)
AATGGGCTATCGGTCCTGTTGAATT
LOC_Os04g48050
Os.13882.1.S1_at--66--4111Chr04:28372975..28372999 (25 bp)
CGAAATGCGTCCTGCTTATGATTCA
LOC_Os04g48050
Os.13882.1.S1_at--579--4931Chr04:28372905..28372929 (25 bp)
GCATTTTACCGAGCTGGGAGTCATA
LOC_Os04g48050
Target Sequence 
GATTGTGTGAATATCCTCCGGTCGAGAACACCGATCCATTTCAACTTCACACCTGTCTCTGCTAATGCAACCACAGGACC
TGACCAGTGTAAATTTTGTATCCAAAATGTGTGATTAGCGTCATATATGTACTTGAAGTGACTCAAGACTGCTGTTCATA
TCCACATACATGGTTGTCCAATGTGTCTTTTACTGTCCGGAATANATGCTTAGTTGCCCCGTGAGTTGTAATTCTTCGAG
TGATCCTCACATTTCCTGCTTGTGTTAGCATGGTTTGTGCTTATGCTCCTGCCTTGGTCATTGGTTCAGCACAAAAACTG
TTGTAAATGGGCTATCGGTCCTGTTGAATTGTCAGGTACAAACGAAATGCGTCCTGCTTATGATTCANNNNNNGTACTCT
CGAAGTCCTACAGCCAGTTCTTCCGAACTGAAGCATTTTACCGAGCTGGGAGTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis