Browse Element(s) Details


Os.54712.1.S1_at

Description gb:AK106571.1
DB_XREF= gi:32991780
TID=Os.54712.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-A05, full insert sequence.
FL= gb:AK106571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4804011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48010Os.54349.1.S1_at10/114+28344724..28348693WD-40 repeat family protein, putative, expressed
LOC_Os04g48020NANA4+28354009..283547886-phospho 3-hexuloisomerase, putative, expressed
LOC_Os04g48030Os.50642.1.S1_at11/114+28355306..28356595HSF-type DNA-binding domain containing protein, expressed
LOC_Os04g48040Os.54712.1.S1_at11/114+28364356..28369174expressed protein
LOC_Os04g48050Os.13882.1.S1_at11/114+28372844..28376629zinc finger family protein, putative, expressed
LOC_Os04g48060Os.13010.1.S1_a_at11/114+28378208..28381195Activator 1 40 kDa subunit, putative, expressed
LOC_Os04g48070Os.8833.1.S1_at11/114+28381594..28387933homeobox protein OCL1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54712.1.S1_at--102--3191Chr04:28364931..28364955 (25 bp)
CAATTATCTGTGGAAAGACCCTGCA
LOC_Os04g48040
Os.54712.1.S1_at--683--171Chr04:28364904..28364928 (25 bp)
ATTTTATTCTGCTACCGTTTTACAG
LOC_Os04g48040
Os.54712.1.S1_at--124--6791Chr04:28364854..28364878 (25 bp)
GTTAGTTTAGGCAGCAGTCCTGCTA
LOC_Os04g48040
Os.54712.1.S1_at--645--3451Chr04:28364840..28364864 (25 bp)
CAGTCCTGCTAGATGTTAGGGTCAC
LOC_Os04g48040
Os.54712.1.S1_at--230--431Chr04:28364809..28364833 (25 bp)
ATCATACTAACCTTTTTTGGTGTCA
LOC_Os04g48040
Os.54712.1.S1_at--831--6491Chr04:28364636..28364660 (25 bp)
GATAGAGGTCTGTTGCTACATGCAA
LOC_Os04g48040
Os.54712.1.S1_at--759--2011Chr04:28364578..28364602 (25 bp)
ACTAATTGTTCTTCAACTGCCTCAA
LOC_Os04g48040
Os.54712.1.S1_at--359--9711Chr04:28364557..28364581 (25 bp)
TCAAAATTCTTATGAGCTTCTGCTC
LOC_Os04g48040
Os.54712.1.S1_at--32--9491Chr04:28364539..28364563 (25 bp)
TCTGCTCATTTACACTCACATATAG
LOC_Os04g48040
Os.54712.1.S1_at--201--6951Chr04:28364448..28364472 (25 bp)
GTAGATCGGATTTAACATTGCCATC
LOC_Os04g48040
Os.54712.1.S1_at--974--71Chr04:28364432..28364456 (25 bp)
ATTGCCATCCACACGGTTTTATGTA
LOC_Os04g48040
Target Sequence 
CAATTATCTGTGGAAAGACCCTGCAGAATTTTATTCTGCTACCGTTTTACAGTAAAACTATAATAACATGCAATCCTGTT
AGTTTAGGCAGCAGTCCTGCTAGATGTTAGGGTCACGGTAAAATCATACTAACCTTTTTTGGTGTCATTTGGCATTTCCA
TGGATACATTTACATTGAACTAAATGATATTTCTGTAATTCCAAAACAGATCAGTCAATTTTCTTCACCTCTCATTCTTC
AATGGCTGCATGTTCAACATGAGAATGTCTTGGAGTGGACAAAACGTACCATTGAGATAGAGGTCTGTTGCTACATGCAA
AGTTCACTACTAGCTTTTTCTTTTTATTAAATAACTAATTGTTCTTCAACTGCCTCAAAATTCTTATGAGCTTCTGCTCA
TTTACACTCACATATAGCATAAGGAAAAACTATGTATGTTTTTTTTGGTATGAACTGGTATATGTATCTGTGTTTGGTGC
AAAGTAGATCGGATTTAACATTGCCATCCACACGGTTTTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis