Browse Element(s) Details


Os.54349.1.S1_at

Description gb:AK103546.1
DB_XREF= gi:32988755
TID=Os.54349.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132E13, full insert sequence.
FL= gb:AK103546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4801010/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48000OsAffx.14322.1.S1_at11/114+28338290..28338728hypothetical protein
LOC_Os04g48010Os.54349.1.S1_at10/114+28344724..28348693WD-40 repeat family protein, putative, expressed
LOC_Os04g48020NANA4+28354009..283547886-phospho 3-hexuloisomerase, putative, expressed
LOC_Os04g48030Os.50642.1.S1_at11/114+28355306..28356595HSF-type DNA-binding domain containing protein, expressed
LOC_Os04g48040Os.54712.1.S1_at11/114+28364356..28369174expressed protein
LOC_Os04g48050Os.13882.1.S1_at11/114+28372844..28376629zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54349.1.S1_at--894--9971Chr04:28348135..28348159 (25 bp)
TACCATCTACCACAGCCAGTGTAAA
LOC_Os04g48010
Os.54349.1.S1_at--473--8111Chr04:28348163..28348187 (25 bp)
GGACGAGTCACAGTTCAAGCTCTTA
LOC_Os04g48010
Os.54349.1.S1_at--1159--5211Chr04:28348271..28348295 (25 bp)
GAATTTCGGTTTACCAGTGCATCAG
LOC_Os04g48010
Os.54349.1.S1_at--651--10871Chr04:28348333..28348357 (25 bp)
TTGGCACCTCACATGGCCTCAAGAA
LOC_Os04g48010
Os.54349.1.S1_at--1082--3491Chr04:28348444..28348468 (25 bp)
CATGGACCAGCGTTGTACATAATCA
LOC_Os04g48010
Os.54349.1.S1_at--387--2371Chr04:28348468..28348492 (25 bp)
AAACCAGTGGTCCTTTGAGATCTCT
LOC_Os04g48010
Os.54349.1.S1_at--689--6411Chr04:28348486..28348510 (25 bp)
GATCTCTACATCAGTGGTTGTTCGT
LOC_Os04g48010
Os.54349.1.S1_at--162--4531Chr04:28348516..28348540 (25 bp)
GCCCGGTAGCTTGTACCTTTTGTAG
LOC_Os04g48010
Os.54349.1.S1_at--1098--10031Chr04:28348554..28348578 (25 bp)
TAGATCAGATTTGTTCTTACTCCCC
LOC_Os04g48010
Os.54349.1.S1_at--832--7411Chr04:28348625..28348649 (25 bp)
GTGTAAATTATCCTCCCATTTTTCG
LOC_Os04g48010
Os.54349.1.S1_at--272--3831Chr04:28348671..28348695 (25 bp)
CTGCAGTTACATATTTTCCATTCAA
NONE
Target Sequence 
TACCATCTACCACAGCCAGTGTAAATTTGGACGAGTCACAGTTCAAGCTCTTAAGGAACTGTTTCCAAGGAACATCAAAC
TCCTGGGGTCAAGTGATAGTTACTGCAGGATGGGATGGCAGGATTAGGTATTTCCAGAATTTCGGTTTACCAGTGCATCA
GTGAATAGTTTGAGCATTGGATGGAAGTAAACGCAGCATTGGCACCTCACATGGCCTCAAGAAAAGCACCCGTGCACCCA
GCTATGCTGGCCCAGCGTGTGGTTACTTGGTACAAGACATCACATGCTTGGTGCTCCTGCTGAATTGTACATGGACCAGC
GTTGTACATAATCAAACCAGTGGTCCTTTGAGATCTCTACATCAGTGGTTGTTCGTGGCAGGCCCGGTAGCTTGTACCTT
TTGTAGAAATCTTTCAGTGTAGATCAGATTTGTTCTTACTCCCCCCACTCAATTGCTCATTGAAATGATAGAAATTTTAG
TCTCATCTGAGTGTAAATTATCCTCCCATTTTTCGTTATCTGGGAGGTCGACGGAACTGCAGTTACATATTTTCCATTCA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis