Browse Element(s) Details


Os.13010.1.S1_a_at

Description gb:AB066661.2
DB_XREF= gi:18996332
GEN=OsRFC4
TID=Os.13010.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13010 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRFC4 mRNA for replication factor C 40kDa subunit, complete cds.
PROD=replication factor C 40kDa subunit
FL= gb:AB066661.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4806011/11Activator 1 40 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48020NANA4+28354009..283547886-phospho 3-hexuloisomerase, putative, expressed
LOC_Os04g48030Os.50642.1.S1_at11/114+28355306..28356595HSF-type DNA-binding domain containing protein, expressed
LOC_Os04g48040Os.54712.1.S1_at11/114+28364356..28369174expressed protein
LOC_Os04g48050Os.13882.1.S1_at11/114+28372844..28376629zinc finger family protein, putative, expressed
LOC_Os04g48060Os.13010.1.S1_a_at11/114+28378208..28381195Activator 1 40 kDa subunit, putative, expressed
LOC_Os04g48070Os.8833.1.S1_at11/114+28381594..28387933homeobox protein OCL1, putative, expressed
LOC_Os04g48080Os.28943.1.S1_x_at3/114+28396670..28399904retrotransposon protein, putative, unclassified
LOC_Os04g48094NANA4+28400530..28414102retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005663cellular_componentDNA replication factor C complex
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13010.1.S1_a_at--958--551Chr04:28380540..28380564 (25 bp)
ATCCGTTGCATGTCAAGAATATGGT
LOC_Os04g48060
Os.13010.1.S1_a_at--1016--9091Chr04:28380599..28380623 (25 bp)
TGCTCTGCTCTGAAGCAATTATATG
LOC_Os04g48060
Os.13010.1.S1_a_at--1018--3131Chr04:28380615..28380639 (25 bp)
AATTATATGATTTGGGCTACTCTCC
LOC_Os04g48060
Os.13010.1.S1_a_at--745--8951Chr04:28380643..28380667 (25 bp)
TGACATAATCACTACTCTCTTCCGG
LOC_Os04g48060
Os.13010.1.S1_a_at--641--1991Chr04:28380656..28380680 (25 bp)
ACTCTCTTCCGGGTTATCAAGAACT
LOC_Os04g48060
Os.13010.1.S1_a_at--407--2031Chr04:28380678..28380702 (25 bp)
ACTACGACATGGCTGAATATCTGAA
LOC_Os04g48060
Os.13010.1.S1_a_at--406--8151Chr04:28380809..28380833 (25 bp)
GGAAACCGGATTTGCTCACATGAGA
LOC_Os04g48060
Os.13010.1.S1_a_at--615--6251Chr04:28380840..28380864 (25 bp)
GATGGTGTTGGCTCATTTCTTCAAT
LOC_Os04g48060
Os.13010.1.S1_a_at--209--8711Chr04:28381017..28381041 (25 bp)
TGTCTCGCTTAAAGTAGAACATCTA
LOC_Os04g48060
Os.13010.1.S1_a_at--1008--7331Chr04:28381048..28381072 (25 bp)
GTGCAATGGAAGATAGCGCCTCGCT
LOC_Os04g48060
Os.13010.1.S1_a_at--687--5351Chr04:28381056..28381080 (25 bp)
GAAGATAGCGCCTCGCTTGAGTAAA
LOC_Os04g48060
Target Sequence 
ATCCGTTGCATGTCAAGAATATGGTGAAAAATGTGCTTNATGGAAAGTTTGATGAGGCNTGCTCTGCTCTGAAGCAATTA
TATGATTTGGGCTACTCTCCCNCTGACATAATCACTACTCTCTTCCGGGTTATCAAGAACTACGACATGGCTGAATATCT
GAAGCTGGAATTGTTGAAGGAAACCGGATTTGCTCACATGAGAATNTGCGATGGTGTTGGCTCATTTCTTCAATTATCAG
GCCTTCTGGCAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCANATGGTAATAGCTGTACGTG
CAACTGTCCTGGCNCGGTAACCTAATGATCTTAGTTAACAATATTCTGGCNTGCTGAGTACAATCATGTCATCTTTTCAA
TNTGTAAGATAGTGTCTCGCTTAAAGTAGAACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13010.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis