Browse Element(s) Details


Os.8833.1.S1_at

Description gb:AB101647.1
DB_XREF= gi:31339100
GEN=Roc4
TID=Os.8833.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8833 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Roc4 mRNA for GL2-type homeodomain protein, complete cds.
PROD=GL2-type homeodomain protein
FL= gb:AK111914.1 gb:AK112099.1 gb:AB101647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4807011/11homeobox protein OCL1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48030Os.50642.1.S1_at11/114+28355306..28356595HSF-type DNA-binding domain containing protein, expressed
LOC_Os04g48040Os.54712.1.S1_at11/114+28364356..28369174expressed protein
LOC_Os04g48050Os.13882.1.S1_at11/114+28372844..28376629zinc finger family protein, putative, expressed
LOC_Os04g48060Os.13010.1.S1_a_at11/114+28378208..28381195Activator 1 40 kDa subunit, putative, expressed
LOC_Os04g48070Os.8833.1.S1_at11/114+28381594..28387933homeobox protein OCL1, putative, expressed
LOC_Os04g48080Os.28943.1.S1_x_at3/114+28396670..28399904retrotransposon protein, putative, unclassified
LOC_Os04g48094NANA4+28400530..28414102retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8833.1.S1_at--452--1131Chr04:28382173..28382197 (25 bp)
AGTCGAGACCGTGAGCAACCTTATC
LOC_Os04g48070
Os.8833.1.S1_at--113--4771Chr04:28382119..28382143 (25 bp)
GCTGCATTGCGACGTGTGAACCCAA
LOC_Os04g48070
Os.8833.1.S1_at--38--9511Chr04:28381920..28381944 (25 bp)
TCTCCTGTGACTGGTGCATGTTGAA
LOC_Os04g48070
Os.8833.1.S1_at--365--8991Chr04:28381894..28381918 (25 bp)
TGAACCTGCATTTTGGACGCCATGT
LOC_Os04g48070
Os.8833.1.S1_at--429--751Chr04:28381873..28381897 (25 bp)
ATGTAGCAGGCCATCTTTCTTTCTT
LOC_Os04g48070
Os.8833.1.S1_at--664--3891Chr04:28381801..28381825 (25 bp)
CTGTGTTTTTTGTTGGCTGGCTCAG
LOC_Os04g48070
Os.8833.1.S1_at--814--10851Chr04:28381772..28381796 (25 bp)
TTGGTGTTTCTGGTTTCTAGCTTTT
LOC_Os04g48070
Os.8833.1.S1_at--305--5411Chr04:28381719..28381743 (25 bp)
GAAGCTCCGAATTGTCGTGCTGGTA
LOC_Os04g48070
Os.8833.1.S1_at--745--6151Chr04:28381691..28381715 (25 bp)
GAGGTTCTGATCATAGGTCTGTGTT
LOC_Os04g48070
Os.8833.1.S1_at--364--271Chr04:28381664..28381688 (25 bp)
ATAGTCTCGAGCTATCAACGCCTGG
LOC_Os04g48070
Os.8833.1.S1_at--709--4471Chr04:28381645..28381669 (25 bp)
GCCTGGCAAATGCAAACCTTGTTAT
LOC_Os04g48070
Target Sequence 
AGTCGAGACCGTGAGCAACCTTATCTCCTGCACCATCAAGAAGATCAAGACGGCGCTGCATTGCGACGTGTGAACCCAAC
AAGGGGGGACTTTTGGCCTAGTGGGAGCGGCTGTGGCGATGAGCCTGAGTCAAGAACGAACCGCGACATAGGAAGGGACC
TTTGCTAGGTGGCAAGGACCGGACGGGGCAGGTCCTTAGCACAGAGCAATGGTGGTGGTTCGGGTATTGACTCAGCCTCT
CCCGCCTCCGTTCTCTCCTGTGACTGGTGCATGTTGAAGTGAACCTGCATTTTGGACGCCATGTAGCAGGCCATCTTTCT
TTCTTTTTCCTTTTTCTTTTTCTTTTTCTTTTTTTAGGGAGAAGGGAGTCATCTGTGTTTTTTGTTGGCTGGCTCAGGGT
GTTGGTGTTTCTGGTTTCTAGCTTTTGTTACAGGGAGATGTGATACATTTTGTAGAAGCTCCGAATTGTCGTGCTGGTAT
GTGAGGTTCTGATCATAGGTCTGTGTTTGATAGTCTCGAGCTATCAACGCCTGGCAAATGCAAACCTTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis