Browse Element(s) Details


Os.426.1.S1_at

Description gb:AB054123.1
DB_XREF= gi:12246884
TID=Os.426.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.426 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ribosomal protein S10, complete cds.
PROD=ribosomal protein S10
FL= gb:AK102190.1 gb:AB054123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g350908/1140S ribosomal protein S10, putative, expressed
LOC_Os09g172701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35060Os.18679.1.S1_at11/114+21123052..21130812nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os04g35070Os.51564.1.S1_at11/114+21132258..21133214expressed protein
LOC_Os04g35070Os.51564.1.S1_s_at11/114+21132258..21133214expressed protein
LOC_Os04g35080Os.9839.1.S1_at11/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35080OsAffx.26339.1.S1_x_at10/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35090Os.426.1.S1_at8/114+21142239..2114481040S ribosomal protein S10, putative, expressed
LOC_Os04g35100Os.8221.1.S1_a_at11/114+21144844..21148155MAP3K-like protein kinase, putative, expressed
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.426.1.S1_at--559--512Chr04:21143004..21143028 (25 bp)
ATCGATGTGCCGAACCTGCAGGTGA
LOC_Os04g35090
Os.426.1.S1_at--657--8911Chr04:21143120..21143144 (25 bp)
TGAGCACCTGCGCAACTACCTTAAC
LOC_Os04g35090
Os.426.1.S1_at--727--9191Chr04:21143146..21143170 (25 bp)
TGCCATCTGAGATTGTGCCTGCCAC
LOC_Os04g35090
Os.426.1.S1_at--12--9271Chr04:21143899..21143923 (25 bp)
TCCTCGTGGTGCTCCTGGTGACTTT
LOC_Os04g35090
Os.426.1.S1_at--1070--8871Chr04:21143950..21143971 (22 bp)
TGAGTTCCAGCCATCCTTTAGGAGC
LOC_Os04g35090
Os.426.1.S1_at--518--10651Chr04:21144538..21144562 (25 bp)
TTCCTCGATGGAGTGAACTTCCCGT
LOC_Os04g35090
Os.426.1.S1_at--1086--7351Chr04:21144550..21144574 (25 bp)
GTGAACTTCCCGTAGTTTGGATATG
LOC_Os04g35090
Os.426.1.S1_at--842--6271Chr04:21144574..21144595 (22 bp)
GATGTTTTCCTTCGCATGAGGCCGT
LOC_Os04g35090
Os.426.1.S1_at--636--9291NONE
TCGCATGAGGCCGTTTAATTTTGAA
NONE
Os.426.1.S1_at--966--731NONE
ATGTTTGCAGGATCGGACCGCTGTT
NONE
Os.426.1.S1_at--546--6391NONE
GATCGGACCGCTGTTGACATATGCT
NONE
Target Sequence 
ATCGATGTGCCGAACCTGCAGGTGATCAAGCTCATGCAGAGCTTCAAGTCCAAGGAGTACGTCAGGGAGACCTTCTCCTG
GCAGTACTACTACTGGTACCTCACCAACGATGGCATTGAGCACCTGCGCAACTACCTTAACCTGCCATCTGAGATTGTGC
CTGCCACACTCAAGAAGTCTGCCAGGCCACCTGGCCGCCCATTTGGTTCTGGCCCACCTGGCGACCGCCCAAGGGGCCCG
CCTCGCTTTGAAGGGGACAGGCCAAGGTTTGGTGACAGAGATGGGTACCGTGGTGGTCCTCGTGGTGCTCCTGGTGACTT
TGGTGGTGAGAAGGGTGGAGCTCCTGCTGAGTTCCAGCCATCCTTTAGGAGCTCTGGTGGCAGACCTGGCTTTGGCCGTG
GTGGTGGCGGAGGCTTTGGCGCTGGCCCGACCTCTTCCTCGATGGAGTGAACTTCCCGTAGTTTGGATATGATGTTTTCC
TTCGCATGAGGCCGTTTAATTTTGAAGGGACAAGTTAAATTATGTAGCAGTGATGTTTGCAGGATCGGACCGCTGTTGAC
ATATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis