Browse Element(s) Details


Os.43464.1.S1_at

Description gb:NM_188476.1
DB_XREF= gi:34904035
GEN=P0665D10.16
TID=Os.43464.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665D10.16 (P0665D10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0665D10.16 (P0665D10.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1192011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11900Os.15968.1.S1_at11/111+6441121..6452790HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os01g11910Os.26488.1.S1_at11/111+6459511..6461837Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g11920Os.43464.1.S1_at11/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920OsAffx.11218.1.S1_at7/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.8736.1.S1_a_at1/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.12757.3.S1_at1/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11930NANA1+6488336..6488558NA
LOC_Os01g11940Os.30557.2.S2_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.2.S1_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.1.S1_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11946Os.26825.2.S1_x_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11946Os.26825.1.S1_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11952Os.50353.1.S1_at11/111+6504158..6511442PHD finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43464.1.S1_at--281--271Chr01:6471217..6471241 (25 bp)
ATAGGGCAGCTTGCAGGTTCAAACT
LOC_Os01g11920
Os.43464.1.S1_at--143--2311Chr01:6471305..6471329 (25 bp)
AAAGGCTTTGCTCAGACGTGCGGCT
LOC_Os01g11920
Os.43464.1.S1_at--713--3411Chr01:6471317..6471341 (25 bp)
CAGACGTGCGGCTTCCTATGGCAAG
LOC_Os01g11920
Os.43464.1.S1_at--770--1091Chr01:6471499..6471523 (25 bp)
AGTGGCGGAAGCCTATTTCCATGCC
LOC_Os01g11920
Os.43464.1.S1_at--829--591Chr01:6471519..6471543 (25 bp)
ATGCCCAGGTTGCTCTGAAGTCTTC
LOC_Os01g11920
Os.43464.1.S1_at--764--3471Chr01:6472726..6472750 (25 bp)
CAGGTGTTTCAGTCATCCATTTCAT
LOC_Os01g11920
Os.43464.1.S1_at--1134--1111Chr01:6472768..6472792 (25 bp)
AGTGCTGCAAAATTTCCCCATTTGT
LOC_Os01g11920
Os.43464.1.S1_at--141--9311Chr01:6472782..6472806 (25 bp)
TCCCCATTTGTGAATACCCTGTGTA
LOC_Os01g11920
Os.43464.1.S1_at--1--7451Chr01:6472802..6472826 (25 bp)
GTGTACCAGATACCCATCTATCAGT
LOC_Os01g11920
Os.43464.1.S1_at--820--3551Chr01:6472816..6472837 (22 bp)
CATCTATCAGTTTCCTCAAGGTCGA
LOC_Os01g11920
Os.43464.1.S1_at--120--251Chr01:6472923..6472947 (25 bp)
ATATAAGCGAGAGCCCTGCTGTTGC
LOC_Os01g11920
Target Sequence 
ATAGGGCAGCTTGCAGGTTCAAACTAGGTCAGTGGGAGAAATCCATTGAGGACTGCAATGAAGCACTCAAGATTCAACCC
AACTATCCAAAGGCTTTGCTCAGACGTGCGGCTTCCTATGGCAAGATGGAGCGATGGGCAGAATCTGTGAAAGATTATGA
AGTTCTTAGAAAGGAACTTCCAGGTGACACTGAAGTGGCGGAAGCCTATTTCCATGCCCAGGTTGCTCTGAAGTCTTCTC
GGGGTGAAGAAGTATCTAATATGAAGTTCGGAGGAGAAGTTGAGGCAATTACTGGAATGGAACAATTCCAGATGGCTACA
TCCTTGCCAGGTGTTTCAGTCATCCATTTCATGACACCTTTAAATCAGCAGTGCTGCAAAATTTCCCCATTTGTGAATAC
CCTGTGTACCAGATACCCATCTATCAGTTTCCTCAAGGTCGATATAAGCGAGAGCCCTGCTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis