Browse Element(s) Details


Os.43764.1.A1_at

Description gb:CF326578
DB_XREF= gi:33801414
DB_XREF=JMT1--06-H04.g1
CLONE=JMT1--06-H04
TID=Os.43764.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transposase (P0462H08.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1248011/11hAT family dimerisation domain containing protein, expressed
LOC_Os01g050309/11hAT family dimerisation domain containing protein
LOC_Os06g074407/11hAT family dimerisation domain containing protein
LOC_Os04g487806/11Transposase, putative
LOC_Os07g177805/11hAT family dimerisation domain containing protein
LOC_Os01g109105/11hAT family dimerisation domain containing protein
LOC_Os01g153805/11hAT family dimerisation domain containing protein
LOC_Os07g393403/11hAT family dimerisation domain containing protein
LOC_Os01g384403/11hAT family dimerisation domain containing protein
LOC_Os09g042801/11hAT family dimerisation domain containing protein
LOC_Os02g010401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12460OsAffx.15389.1.S1_at11/116+6757182..6761996glycosyltransferase 5, putative, expressed
LOC_Os06g12470Os.33878.1.S1_at6/116+6763464..6771922expressed protein
LOC_Os06g12470OsAffx.21953.1.S1_at2/116+6763464..6771922expressed protein
LOC_Os06g12480Os.43764.1.A1_at11/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.7.S1_x_at3/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.2.S1_x_at3/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.3.S1_x_at1/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12490OsAffx.27584.1.S1_at11/116+6781327..6782881hypothetical protein
LOC_Os06g12500OsAffx.15391.1.S1_at11/116+6788041..6788851plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g12510OsAffx.4812.1.S1_at11/116+6789517..6791070pentatricopeptide, putative
LOC_Os06g12520OsAffx.4813.1.S1_at11/116+6792121..6792388hypothetical protein
LOC_Os06g12530Os.14007.1.S1_at11/116+6793152..6795998Nuclear migration protein nudC, putative, expressed
LOC_Os06g12540Os.50302.1.S1_at11/116+6795507..6797469pentatricopeptide, putative, expressed
LOC_Os06g12550OsAffx.4814.1.S1_at11/116+6800972..6801358hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43764.1.A1_at--809--8958Chr07:23566488..23566512 (25 bp)
TGACATCTGCTACTGCTTTGCTTCA
LOC_Os07g39340
Os.43764.1.A1_at--130--102710Chr12:7875668..7875693 (23 bp)
TTTGCTTCAGGCAGCTTCTTCAACT
NONE
Os.43764.1.A1_at--1097--9693Chr01:2363439..2363463 (25 bp)
TCAACTGCTAATCTCAATCCTTCTG
LOC_Os01g05030
Os.43764.1.A1_at--941--3033Chr01:2363454..2363478 (25 bp)
AATCCTTCTGAACTGTCTGCATATC
LOC_Os01g05030
Os.43764.1.A1_at--291--9634Chr01:21934440..21934464 (25 bp)
TCATGTTCTTTCAATCTTAGCTAAA
LOC_Os01g38440
Os.43764.1.A1_at--818--2338Chr01:5819072..5819096 (25 bp)
AAAGATGTTATGACTGTTCCTGTTT
LOC_Os01g10910
Os.43764.1.A1_at--423--6918Chr07:23566740..23566764 (25 bp)
GTCGGCGGCGTCTAAACCCTAGGCT
LOC_Os07g39340
Os.43764.1.A1_at--293--4197Chr01:21934557..21934581 (25 bp)
CCCTAGGCTGGTGGAAATTCTGGCA
LOC_Os01g38440
Os.43764.1.A1_at--809--6258Chr01:21934684..21934708 (25 bp)
GATGTAAACCCTTGAACTGGATGAT
NONE
Os.43764.1.A1_at--1151--9997Chr01:2363844..2363868 (25 bp)
TAGCTATGGGCTGTACTCTTTTCCT
LOC_Os01g05030
Os.43764.1.A1_at--184--94920Chr07:23566954..23566978 (25 bp)
TCTAGGGTTTTCTCACGAGGTGTGA
NONE
Target Sequence 
TGACATCTGCTACTGCTTTGCTTCAGGCAGCTTCTTCAACTGCTAATCTCAATCCTTCTGAACTGTCTGCATATCTTGAC
AGTGACACTGTCAACCAATATGATGATGACTTCAATATCCTTAGTTGGTGGCAACAGCACAAACTAACTTATCATGTTCT
TTCAATCTTAGCTAAAGATGTTATGACTGTTCCTGTTTCTACTATATCGTCCGAGTCTACTTTTAGCTTAACTGGCAGGA
TCATCGAGGACCGTCGGCGGCGTCTAAACCCTAGGCTGGTGGAAATTCTGGCAGTGATCAAGGACTGGGAGCTAGCAGAT
GCAAAAAGTCAGCATACTACTGAGAATGTGGAGCTTCAAAATGCTTATGAGAATATGTATCTTGATGATGAAATTGATGT
AAACCCTTGAACTGGATGATTGTAATNNATATGAACATTTTAGCTATGGGCTGTACTCTTTTCCTTTCTAGGGTTTTCTC
ACGAGGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43764.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis