Browse Element(s) Details


Os.4384.1.S1_at

Description gb:AB028183.1
DB_XREF= gi:6730937
GEN=OsNAC4
TID=Os.4384.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4384 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OsNAC4 protein, complete cds.
PROD=OsNAC4 protein
FL= gb:AB028183.1 gb:AK073848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6002011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59970Os.4633.1.S1_at5/111+35001691..35002854expressed protein
LOC_Os01g59980Os.13253.1.S1_at11/111+35004885..35009062Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g59990Os.4678.1.S1_at11/111+35009369..3501222660S ribosomal protein L24, putative, expressed
LOC_Os01g60000Os.18605.1.S1_s_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60000OsAffx.23864.1.S1_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60010OsAffx.23865.1.S1_at11/111+35016718..35018366pentatricopeptide, putative, expressed
LOC_Os01g60020Os.4384.1.S1_at11/111+35019726..35021240No apical meristem protein, expressed
LOC_Os01g60040Os.31272.1.S2_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.2.S1_x_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S1_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S2_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009744biological_processresponse to sucrose stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4384.1.S1_at--648--8351Chr01:35020266..35020290 (25 bp)
GGCGGCTGACACCATGTCCGACAGC
LOC_Os01g60020
Os.4384.1.S1_at--885--9031Chr01:35020084..35020108 (25 bp)
TGCAGCCGCCGTACATGATGAACCT
LOC_Os01g60020
Os.4384.1.S1_at--708--5431Chr01:35020065..35020089 (25 bp)
GAACCTGCAGCACATGCAGATGCAG
LOC_Os01g60020
Os.4384.1.S1_at--767--1851Chr01:35020015..35020039 (25 bp)
ACGACGGCGGCTACTTGCAGTCCAT
LOC_Os01g60020
Os.4384.1.S1_at--1105--391Chr01:35019992..35020016 (25 bp)
ATCAGCTCGCCGCAGATGAAGATGT
LOC_Os01g60020
Os.4384.1.S1_at--1108--3031Chr01:35019960..35019984 (25 bp)
AATCCTGCCACCATTCTGAGATGGA
LOC_Os01g60020
Os.4384.1.S1_at--589--2271Chr01:35019845..35019869 (25 bp)
AAATCTGGCAAGCATGATTCTGCAA
LOC_Os01g60020
Os.4384.1.S1_at--772--4991Chr01:35019834..35019858 (25 bp)
GCATGATTCTGCAAATGTGGTGGTA
LOC_Os01g60020
Os.4384.1.S1_at--478--791Chr01:35019820..35019844 (25 bp)
ATGTGGTGGTAGATGCTTGCAGTAT
LOC_Os01g60020
Os.4384.1.S1_at--289--6751Chr01:35019784..35019808 (25 bp)
GTTCAGTATATGCATTTGGTAATCT
LOC_Os01g60020
Os.4384.1.S1_at--167--3851Chr01:35019761..35019785 (25 bp)
CTGCAAAACATCTCCTTTTGTTCTC
LOC_Os01g60020
Target Sequence 
GGCGGCTGACACCATGTCCGACAGCTTCCAGACGCACGACTCCGACATCGACAACGCCTCCGCCGGCCTGCGGCACGGTG
GCTGCGGCGGCGGCGGCTTCGGCGACGTGGCGCCGCCGAGGAATGGGTTCGTGACGGTGAAGGAGGACAACGACTGGTTC
ACCGGCCTCAACTTCGACGAGCTGCAGCCGCCGTACATGATGAACCTGCAGCACATGCAGATGCAGATGGTGAATCCGGC
GGCGCCAGGGCACGACGGCGGCTACTTGCAGTCCATCAGCTCGCCGCAGATGAAGATGTGGCAGACAATCCTGCCACCAT
TCTGAGATGGATGGAGCAAGAAAAAGGTTGCTGTAGATAAAGGGCGGAAATAGGAGTGATGGCTAGAAAATTATTAGATT
TACTAGAACGAAAATGATTAGAAATCTGGCAAGCATGATTCTGCAAATGTGGTGGTAGATGCTTGCAGTATGTAATTCAT
TTGTTCAGTATATGCATTTGGTAATCTGCAAAACATCTCCTTTTGTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis