Browse Element(s) Details


Os.439.1.S1_at

Description gb:AB051296.1
DB_XREF= gi:17025921
GEN=OsNIF3
TID=Os.439.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.439 (NCBI UniGene Cluster)
DEF=Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds.
PROD=bZIP transcription factor
FL= gb:AB051296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1726011/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17240Os.435.1.S1_at11/111+9910168..9914082Major Facilitator Superfamily protein, expressed
LOC_Os01g17250Os.50964.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17250Os.436.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17260Os.439.1.S1_at11/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17260OsAffx.2025.1.S1_x_at10/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17279Os.32656.1.S1_at11/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17279Os.40082.1.A1_x_at7/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17300Os.30881.3.S1_x_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17300Os.30881.3.S1_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17310NANA1+9953822..9955628retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.439.1.S1_at--796--8411Chr01:9932343..9932367 (25 bp)
GGCCGAAAGAATAGCAAGCGCAAGT
LOC_Os01g17260
Os.439.1.S1_at--1038--5171Chr01:9932362..9932386 (25 bp)
GCAAGTAACTTGACTGCAACCACAT
LOC_Os01g17260
Os.439.1.S1_at--192--5631Chr01:9932373..9932397 (25 bp)
GACTGCAACCACATTTTTCGGGTTT
LOC_Os01g17260
Os.439.1.S1_at--667--9971Chr01:9932416..9932440 (25 bp)
TACCTGGAAGAGTTGACAATCCTGC
LOC_Os01g17260
Os.439.1.S1_at--1002--6571Chr01:9932450..9932474 (25 bp)
GATTCGGAGATATTTGCACATACTA
LOC_Os01g17260
Os.439.1.S1_at--726--6031Chr01:9932485..9932509 (25 bp)
GAGATCCTTGTGTTCAGGTAGCTTA
LOC_Os01g17260
Os.439.1.S1_at--989--9631Chr01:9932498..9932522 (25 bp)
TCAGGTAGCTTAGTCTTATGGTTAA
LOC_Os01g17260
Os.439.1.S1_at--1082--8571Chr01:9932516..9932540 (25 bp)
TGGTTAAGTGCATTAGGCCCTGGCC
LOC_Os01g17260
Os.439.1.S1_at--1048--4931Chr01:9932525..9932549 (25 bp)
GCATTAGGCCCTGGCCCATGTTGTA
LOC_Os01g17260
Os.439.1.S1_at--566--3511Chr01:9932541..9932565 (25 bp)
CATGTTGTACTGTTAGCCGCTGTAA
LOC_Os01g17260
Os.439.1.S1_at--349--4491Chr01:9932556..9932580 (25 bp)
GCCGCTGTAAAATACTGTTCCATTA
LOC_Os01g17260
Target Sequence 
GGCCGAAAGAATAGCAAGCGCAAGTAACTTGACTGCAACCACATTTTTCGGGTTTGGGAGGTGATGGTGATCTTACCTGG
AAGAGTTGACAATCCTGCAAAGGACTTGATTCGGAGATATTTGCACATACTATAATCCAAAAGAGATCCTTGTGTTCAGG
TAGCTTAGTCTTATGGTTAAGTGCATTAGGCCCTGGCCCATGTTGTACTGTTAGCCGCTGTAAAATACTGTTCCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis