Browse Element(s) Details


Os.4494.1.S1_at

Description gb:AB030956.1
DB_XREF= gi:6970471
GEN=OsGAI
TID=Os.4494.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4494 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for OsGAI, complete cds.
PROD=OsGAI
FL= gb:AB030956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4999011/11gibberellin response modulator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49970OsAffx.13429.1.S1_at10/113+28441670..28442887hypothetical protein
LOC_Os03g49980OsAffx.32166.1218.S1_x_at9/113+28446410..28456368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49980Os.7307.3.S1_x_at4/113+28446410..28456368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49990Os.4494.1.S1_at11/113+28461808..28464323gibberellin response modulator, putative, expressed
LOC_Os03g50010Os.20280.1.S1_at11/113+28482271..28490414chloroplast outer membrane translocon subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0010233biological_processphloem transport
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4494.1.S1_at--272--3891Chr03:28463766..28463790 (25 bp)
CTGGGCTCCAATGCCTACAAACAGG
LOC_Os03g49990
Os.4494.1.S1_at--483--2331Chr03:28463926..28463950 (25 bp)
AAAGTTTTTGGGACGCTGCACCACG
LOC_Os03g49990
Os.4494.1.S1_at--959--9671Chr03:28464007..28464031 (25 bp)
TCACCGGCGGCACAATTGAAGCTTG
LOC_Os03g49990
Os.4494.1.S1_at--136--8951Chr03:28464030..28464054 (25 bp)
TGACGTCAACGAACGCTCAATTGCA
LOC_Os03g49990
Os.4494.1.S1_at--1116--9731Chr03:28464046..28464070 (25 bp)
TCAATTGCAGCGACCGATCGGGCTT
LOC_Os03g49990
Os.4494.1.S1_at--305--8271Chr03:28464066..28464090 (25 bp)
GGCTTACGGTTCTCGCCGGCGTGAA
LOC_Os03g49990
Os.4494.1.S1_at--361--2771Chr03:28464089..28464113 (25 bp)
AAGAGATCGACGACTGGACTCCGAC
LOC_Os03g49990
Os.4494.1.S1_at--271--1391Chr03:28464115..28464139 (25 bp)
AGACCGACGGCTTGTTCGTTCTCCT
LOC_Os03g49990
Os.4494.1.S1_at--298--7451Chr03:28464204..28464228 (25 bp)
GTGTAATTTCTCCAATCGCTCATAT
LOC_Os03g49990
Os.4494.1.S1_at--130--951Chr03:28464235..28464259 (25 bp)
AGGACGAACCGAACTGGATTTCATT
LOC_Os03g49990
Os.4494.1.S1_at--1137--151Chr03:28464273..28464297 (25 bp)
ATTTTGTATACAAGGCACCGATCTA
LOC_Os03g49990
Target Sequence 
CTGGGCTCCAATGCCTACAAACAGGCGAGCACGCTCCTCGCGCTTTTCGCCGGCGGCGACGGCTACCGGGTGGAGGAGAA
GGAGGGCTGCCTCACGCTGGGCTGGCACACGCGCCCGCTCATCGCCACCTCGGCATGGCGCGTCGCCGCGGCGTGATCGC
AAAGTTTTTGGGACGCTGCACCACGTGTTTGCCGCCGATCACGGCGCGANCCCCCCCCCCCCCCCTCTCTCTCTCCCCGG
CTCACCGGCGGCACAATTGAAGCTTGACGTCAACGAACGCTCAATTGCAGCGACCGATCGGGCTTACGGTTCTCGCCGGC
GTGAAGAGATCGACGACTGGACTCCGACCAGACCGACGGCTTGTTCGTTCTCCTTTCCCAATTACCCCGTTCCTTGGTCC
TCCTAGCCCATCTATTATGTTTAAATGTCAATTATTATGTGTAATTTCTCCAATCGCTCATATTAAATAAGGACGAACCG
AACTGGATTTCATTAGCTNCAATGAGAATTTTGTATACAAGGCACCGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis