Browse Element(s) Details


OsAffx.13429.1.S1_at

Description tigr:9631.m04876
TID=OsAffx.13429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4997010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49930OsAffx.13428.3.S1_at10/113+28416126..28418512pentatricopeptide, putative, expressed
LOC_Os03g49940Os.3163.1.A1_at11/113+28419751..28422846Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g49960Os.3166.1.S1_at11/113+28423320..28432844expressed protein
LOC_Os03g49970OsAffx.13429.1.S1_at10/113+28441670..28442887hypothetical protein
LOC_Os03g49980OsAffx.32166.1218.S1_x_at9/113+28446410..28456368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49980Os.7307.3.S1_x_at4/113+28446410..28456368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49990Os.4494.1.S1_at11/113+28461808..28464323gibberellin response modulator, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13429.1.S1_at--1136--10591Chr03:28442811..28442835 (25 bp)
TTCTGGTGGCGCGTCTCGTGCGTCA
LOC_Os03g49970
OsAffx.13429.1.S1_at--22--9511Chr03:28442798..28442822 (25 bp)
TCTCGTGCGTCAGGACCGGGAGAAA
LOC_Os03g49970
OsAffx.13429.1.S1_at--500--8091Chr03:28442786..28442810 (25 bp)
GGACCGGGAGAAATCGCTACGCCTA
LOC_Os03g49970
OsAffx.13429.1.S1_at--973--4191Chr03:28442761..28442785 (25 bp)
CCCGGCTATCCGGTCGGTTGGAGCA
LOC_Os03g49970
OsAffx.13429.1.S1_at--254--5411Chr03:28442328..28442352 (25 bp)
GAAGCCCATCACTCGGTTTAGAAAA
LOC_Os03g49970
OsAffx.13429.1.S1_at--364--2251Chr03:28442287..28442311 (25 bp)
AAATTATTTGTTTGCCTGTTGTCAC
LOC_Os03g49970
OsAffx.13429.1.S1_at--1112--10691Chr03:28442276..28442300 (25 bp)
TTGCCTGTTGTCACAAAACATAGTA
LOC_Os03g49970
OsAffx.13429.1.S1_at--691--10051Chr03:28442256..28442280 (25 bp)
TAGTAGGTATATCCATGCTATGCAG
LOC_Os03g49970
OsAffx.13429.1.S1_at--679--251NONE
ATATCCATGCTATGCAGGGTACCAA
NONE
OsAffx.13429.1.S1_at--621--5011Chr03:28441727..28441749 (23 bp)
GCAGGGTACCAAAAATCACATCTCA
LOC_Os03g49970
OsAffx.13429.1.S1_at--231--2271Chr03:28441715..28441739 (25 bp)
AAATCACATCTCAGGAGCTCTCAGC
LOC_Os03g49970
Target Sequence 
TTCTGGTGGCGCGTCTCGTGCGTCAGGACCGGGAGAAATCGCTACGCCTACCCGGCTATCCGGTCGGTTGGAGCAGATGG
CTAGTGAAGCCCATCACTCGGTTTAGAAAAAATCTCGTTCATACAAAAATTATTTGTTTGCCTGTTGTCACAAAACATAG
TAGGTATATCCATGCTATGCAGGGTACCAAAAATCACATCTCAGGAGCTCTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis