Browse Element(s) Details


OsAffx.13428.3.S1_at

Description tigr:9631.m04872
TID=OsAffx.13428.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4993010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49890OsAffx.3559.1.S1_at11/113+28394232..28394540hypothetical protein
LOC_Os03g49900Os.10336.1.S1_at11/113+28397991..28405566zinc finger family protein, putative, expressed
LOC_Os03g49910OsAffx.19542.3.S1_x_at6/113+28407129..28411327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49920OsAffx.25653.1.S1_at11/113+28414232..28414537hypothetical protein
LOC_Os03g49930OsAffx.13428.3.S1_at10/113+28416126..28418512pentatricopeptide, putative, expressed
LOC_Os03g49940Os.3163.1.A1_at11/113+28419751..28422846Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g49960Os.3166.1.S1_at11/113+28423320..28432844expressed protein
LOC_Os03g49970OsAffx.13429.1.S1_at10/113+28441670..28442887hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13428.3.S1_at--328--3831NONE
CTGCGTTGCCAGTACTCGACTGGAA
NONE
OsAffx.13428.3.S1_at--1110--1171Chr03:28416855..28416878 (24 bp)
AGTACTCGACTGGAAGTCTTCCTGA
LOC_Os03g49930
OsAffx.13428.3.S1_at--10--2851Chr03:28416842..28416866 (25 bp)
AAGTCTTCCTGAATCGGCGGCTGGA
LOC_Os03g49930
OsAffx.13428.3.S1_at--792--2851Chr03:28416753..28416777 (25 bp)
AAGTCCTCGGGCTGAGCAGCGCAGC
LOC_Os03g49930
OsAffx.13428.3.S1_at--11--671Chr03:28416416..28416440 (25 bp)
ATGAAGGGCGTCATCCATGGCTACG
LOC_Os03g49930
OsAffx.13428.3.S1_at--1117--7111Chr03:28416407..28416431 (25 bp)
GTCATCCATGGCTACGTGTTCATCA
LOC_Os03g49930
OsAffx.13428.3.S1_at--641--9931Chr03:28416395..28416419 (25 bp)
TACGTGTTCATCACCAACTCGCTGG
LOC_Os03g49930
OsAffx.13428.3.S1_at--488--2551Chr03:28416380..28416404 (25 bp)
AACTCGCTGGTGTGCATGTACGGCA
LOC_Os03g49930
OsAffx.13428.3.S1_at--874--6431Chr03:28416279..28416303 (25 bp)
GATCACCAGCTACGCTACAGCTGGG
LOC_Os03g49930
OsAffx.13428.3.S1_at--101--9951Chr03:28416269..28416293 (25 bp)
TACGCTACAGCTGGGCTGTGCGACG
LOC_Os03g49930
OsAffx.13428.3.S1_at--95--7131Chr03:28416170..28416194 (25 bp)
GTCATCAGCGGGTTCGGAAAGAGAA
LOC_Os03g49930
Target Sequence 
CTGCGTTGCCAGTACTCGACTGGAAGTCTTCCTGAATCGGCGGCTGGACATGCGGTGGCGACGCCGCGTTCTCCTTCGAG
GCGCCCCGGCGCCGACGCGGCGGACGAGGGCGAAGTCCTCGGGCTGAGCAGCGCAGCGGCGGTGTGGATGGGTGCCCAGG
CGAGGAGCGGCTGTGAGGGGAACGCCGAGTCCATGGCCGTGGCGCTCTCGGCGTGCCCTTATGCCGGCGACCTTGCATTG
GCCAAAGGGGAGGCGACACACGGCTGCGGCGTCATGAAGGGCGTCATCCATGGCTACGTGTTCATCACCAACTCGCTGGT
GTGCATGTACGGCAAGCTCGGGGAGATGGACAACGCCAAGAAAGCTTTCAGGGACGCGACGGAGAAGAACATCGTGACAT
GGAATACCCTGATCACCAGCTACGCTACAGCTGGGCTGTGCGACGAGGCATTGGACGTGCTCGCCCAGATGGAGCAGATC
GGCGGCACGGTCGCGCCCAATGTGGTCAGCTGGAGCGCGGTCATCAGCGGGTTCGGAAAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13428.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis