Browse Element(s) Details


OsAffx.25653.1.S1_at

Description tigr:9631.m04871
TID=OsAffx.25653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4992011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49890OsAffx.3559.1.S1_at11/113+28394232..28394540hypothetical protein
LOC_Os03g49900Os.10336.1.S1_at11/113+28397991..28405566zinc finger family protein, putative, expressed
LOC_Os03g49910OsAffx.19542.3.S1_x_at6/113+28407129..28411327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49920OsAffx.25653.1.S1_at11/113+28414232..28414537hypothetical protein
LOC_Os03g49930OsAffx.13428.3.S1_at10/113+28416126..28418512pentatricopeptide, putative, expressed
LOC_Os03g49940Os.3163.1.A1_at11/113+28419751..28422846Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g49960Os.3166.1.S1_at11/113+28423320..28432844expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25653.1.S1_at--1020--9431Chr03:28414265..28414289 (25 bp)
TCGGACTCGGGCCACGACAACAGTG
LOC_Os03g49920
OsAffx.25653.1.S1_at--520--3351Chr03:28414277..28414301 (25 bp)
CACGACAACAGTGGCCGGAACGGAG
LOC_Os03g49920
OsAffx.25653.1.S1_at--484--3271Chr03:28414282..28414306 (25 bp)
CAACAGTGGCCGGAACGGAGCTGTC
LOC_Os03g49920
OsAffx.25653.1.S1_at--985--5751Chr03:28414341..28414365 (25 bp)
GACGTGGGCTGCACGGGTACATCGC
LOC_Os03g49920
OsAffx.25653.1.S1_at--403--4151Chr03:28414369..28414393 (25 bp)
CGCGGTGGTGCTTCTGGCGTCAACT
LOC_Os03g49920
OsAffx.25653.1.S1_at--481--7331Chr03:28414376..28414400 (25 bp)
GTGCTTCTGGCGTCAACTCCATATG
LOC_Os03g49920
OsAffx.25653.1.S1_at--1035--8471Chr03:28414383..28414407 (25 bp)
TGGCGTCAACTCCATATGCTCCTCT
LOC_Os03g49920
OsAffx.25653.1.S1_at--972--251Chr03:28414396..28414420 (25 bp)
ATATGCTCCTCTCCACATTCAAGGC
LOC_Os03g49920
OsAffx.25653.1.S1_at--658--9491Chr03:28414405..28414429 (25 bp)
TCTCCACATTCAAGGCGACGAGCTC
LOC_Os03g49920
OsAffx.25653.1.S1_at--369--8391Chr03:28414447..28414471 (25 bp)
GGCGAAGGACGACTGCCGCTGGCGA
LOC_Os03g49920
OsAffx.25653.1.S1_at--961--3991Chr03:28414482..28414506 (25 bp)
CGTGGGACGTGGACTATGAGCCCAC
LOC_Os03g49920
Target Sequence 
TCGGACTCGGGCCACGACAACAGTGGCCGGAACGGAGCTGTCGCCGGAGTGGTTGGACATGGAGTTGGAGCCGGTGGACG
TGGGCTGCACGGGTACATCGCGTGCGCGGTGGTGCTTCTGGCGTCAACTCCATATGCTCCTCTCCACATTCAAGGCGACG
AGCTCCAGCATGGGGTGTGGACGGCGAAGGACGACTGCCGCTGGCGACAAGCTCCGGCGTGGGACGTGGACTATGAGCCC
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis