Browse Element(s) Details


Os.3163.1.A1_at

Description gb:CB624422
DB_XREF= gi:29619410
DB_XREF=OSIIEa12P18.r
CLONE=OSIIEa12P18
TID=Os.3163.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.3163 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4994011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49900Os.10336.1.S1_at11/113+28397991..28405566zinc finger family protein, putative, expressed
LOC_Os03g49910OsAffx.19542.3.S1_x_at6/113+28407129..28411327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49920OsAffx.25653.1.S1_at11/113+28414232..28414537hypothetical protein
LOC_Os03g49930OsAffx.13428.3.S1_at10/113+28416126..28418512pentatricopeptide, putative, expressed
LOC_Os03g49940Os.3163.1.A1_at11/113+28419751..28422846Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g49960Os.3166.1.S1_at11/113+28423320..28432844expressed protein
LOC_Os03g49970OsAffx.13429.1.S1_at10/113+28441670..28442887hypothetical protein
LOC_Os03g49980OsAffx.32166.1218.S1_x_at9/113+28446410..28456368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49980Os.7307.3.S1_x_at4/113+28446410..28456368retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3163.1.A1_at--285--6631Chr03:28421915..28421938 (24 bp)
GTTGGTGCCGCTCTTGTATTATGTG
LOC_Os03g49940
Os.3163.1.A1_at--60--3191Chr03:28422174..28422198 (25 bp)
CAATTATTTGGGTCAGCTCCTGAAA
LOC_Os03g49940
Os.3163.1.A1_at--216--6671Chr03:28422223..28422247 (25 bp)
GTTGCAATACCTTAGAAACCCCGCT
LOC_Os03g49940
Os.3163.1.A1_at--387--5551Chr03:28422237..28422261 (25 bp)
GAAACCCCGCTGAAACGACAGGATT
LOC_Os03g49940
Os.3163.1.A1_at--121--1011Chr03:28422256..28422280 (25 bp)
AGGATTACCTCTCGTTGTCTGCTAT
LOC_Os03g49940
Os.3163.1.A1_at--593--8711Chr03:28422271..28422295 (25 bp)
TGTCTGCTATCCCAGTCGATTCAAG
LOC_Os03g49940
Os.3163.1.A1_at--914--9891Chr03:28422538..28422562 (25 bp)
TACTCCCATACGTGCATTTGCCTTT
LOC_Os03g49940
Os.3163.1.A1_at--476--2291Chr03:28422607..28422631 (25 bp)
AAATGAGGCATCACTGACTGGGTTT
LOC_Os03g49940
Os.3163.1.A1_at--239--371Chr03:28422651..28422675 (25 bp)
ATCAAGGTAGATTAGCGGCACGCTT
LOC_Os03g49940
Os.3163.1.A1_at--334--5611Chr03:28422758..28422782 (25 bp)
GACAATCATACCTTTGATGGGACAT
LOC_Os03g49940
Os.3163.1.A1_at--471--8131Chr03:28422777..28422801 (25 bp)
GGACATCTTACTCCCATGAAATCAT
LOC_Os03g49940
Target Sequence 
GTTGGTGCCGCTCTTGTATTATGTGGCAGCTTAACTGTTCAATTATTTGGGTCAGCTCCTGAAAAATCCAAGAAAGTTAA
GACGCGCAGTTGCAATACCTTAGAAACCCCGCTGAAACGACAGGATTACCTCTCGTTGTCTGCTATCCCAGTCGATTCAA
GGAAGAATATAGGAAGCCGATTAGAGAGGAAGGACAAAACGTTGTAGTCCAACGCCAAGGCAAAAAAGGCATCATCTGAA
GAAGNCAAATAGAGAGAGGAAGACGCTAAAGTTGATGCAGAAAGCTTCCTACTCCCATACGTGCATTTGCCTTTTGGGGC
ATCGTCTGTAATATAGGAAGATGCCTCATACATATTAAAAATGAGGCATCACTGACTGGGTTTGGGGTTTGGGGACAAGG
AGATCAAGGTAGATTAGCGGCACGCTTGTAAATTATGGGGGGTAAACACTGTAGTGTTGGTAGACAAATAGATATGCATG
TATACACAATTAGCAGATTATTGTGTACAGACAATCATACCTTTGATGGGACATCTTACTCCCATGAAATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3163.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis