Browse Element(s) Details


Os.45014.1.S1_at

Description gb:CR282872
DB_XREF= gi:44669438
DB_XREF=CR282872
CLONE=y724h07p3
TID=Os.45014.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0010I09.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g565908/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56560NANA3+32159327..32162255retrotransposon protein, putative, unclassified
LOC_Os03g56566NANA3+32162585..32163992retrotransposon protein, putative, unclassified
LOC_Os03g56572NANA3+32164105..32168709retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g56580Os.17090.1.S1_at11/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56580Os.51926.1.S1_x_at1/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56590Os.45014.1.S1_at8/113+32177135..32179764expressed protein
LOC_Os03g56600Os.15920.1.S1_at1/113+32181481..32182113hypothetical protein
LOC_Os03g56610Os.15813.1.S1_at11/113+32183394..32185758expressed protein
LOC_Os03g56620Os.35191.2.S1_x_at11/113+32187851..32190559expressed protein
LOC_Os03g56630Os.7401.1.S2_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56630Os.7401.1.S1_a_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56640OsAffx.13508.1.S1_at11/113+32197923..32198531transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45014.1.S1_at--1094--4531Chr03:32177645..32177669 (25 bp)
GCCCTTGACAAGTGACAGATCTCAT
LOC_Os03g56590
Os.45014.1.S1_at--340--10211Chr03:32177591..32177615 (25 bp)
TATTATTGGATTGGTCGCTGCTCAC
LOC_Os03g56590
Os.45014.1.S1_at--88--7811Chr03:32177579..32177603 (25 bp)
GGTCGCTGCTCACTGGAGAGACACA
LOC_Os03g56590
Os.45014.1.S1_at--904--3411Chr03:32177556..32177580 (25 bp)
CAGAACCAGATACTTTCACTCCTAA
LOC_Os03g56590
Os.45014.1.S1_at--770--851Chr03:32177517..32177541 (25 bp)
ATGGCATTCCCAACTCAACAAACAA
LOC_Os03g56590
Os.45014.1.S1_at--984--1091Chr03:32177206..32177230 (25 bp)
AGTGGAAACACATCTCAGCTTTCTG
LOC_Os03g56590
Os.45014.1.S1_at--142--331Chr03:32177160..32177184 (25 bp)
ATACTGCCGCATCTACTTCTAACTA
LOC_Os03g56590
Os.45014.1.S1_at--608--2531Chr03:32177140..32177164 (25 bp)
AACTACCTATGTGTCGCTGCTATTA
LOC_Os03g56590
Os.45014.1.S1_at--939--7831NONE
GGTACTTAAGCTTCTGGTGTGGTAT
NONE
Os.45014.1.S1_at--43--7751NONE
GGTGTGGTATGGTTTTCCGCTGCCA
NONE
Os.45014.1.S1_at--1010--3711Chr03:32176988..32177012 (25 bp)
CTACTAGGTAGTCCCCAGAAATGAT
NONE
Target Sequence 
GCCCTTGACAAGTGACAGATCTCATTCTGCTAAGAGTTCAGAAGAAGATAGGCCTATTATTGGATTGGTCGCTGCTCACT
GGAGAGACACAGAACCAGATACTTTCACTCCTAAATGGTGGGATGGAAATGGCATTCCCAACTCAACAAACAAATACAAA
GAAGATCAAAAGGTGAGTTGGCANGCAACACCATTCGAGGAGAGGCTTGAGAAGGCTTTATCTGATGAGAAATTGCTTTC
ACAAAGAAAATGCTCTAGTGGAAACACATCTCAGCTTTCTGGGCTGGAAGGAGAGGAAAATGATACTGCCGCATCTACTT
CTAACTACCTATGTGTCGCTGCTATTACATGATATATTCATCCACCAAGAGGTACTTAAGCTTCTGGTGTGGTATGGTTT
TCCGCTGCCATCTTCCTAATTGGTGTGTNTTGCACAGTCCTGCTTCCCTCTGCTGTCCTCCAGCAGGTACNTAGNCTACT
AGGTAGTCCCCAGAAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis