Browse Element(s) Details


Os.45095.1.S1_at

Description gb:AK120622.1
DB_XREF= gi:37990245
TID=Os.45095.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pentatricopeptide repeat protein (OSJNBa0087M10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152K06, full insert sequence.
FL= gb:AK120622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4002011/11DEAD/DEAH box helicase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39970OsAffx.22691.1.S1_at10/113+22165511..22167507hypothetical protein
LOC_Os03g39980OsAffx.25443.1.S1_at11/113+22168202..22169035expressed protein
LOC_Os03g40000Os.22924.1.S1_at10/113+22170865..22172779expressed protein
LOC_Os03g40010Os.11763.1.S1_at10/113+22173892..22181813expressed protein
LOC_Os03g40014NANA3+22185106..22186086NA
LOC_Os03g40020Os.45095.1.S1_at11/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40020Os.53366.1.S1_x_at4/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40030OsAffx.22692.1.S1_at11/113+22194083..22194613hypothetical protein
LOC_Os03g40030OsAffx.22692.1.S1_x_at11/113+22194083..22194613hypothetical protein
LOC_Os03g40040Os.30589.1.S1_at11/113+22197814..22199276expressed protein
LOC_Os03g40060Os.28873.2.A1_at11/113+22208198..22209514hypothetical protein
LOC_Os03g40070Os.52824.1.S1_at11/113+22209847..22213778transposon protein, putative, unclassified, expressed
LOC_Os03g40080OsAffx.25445.1.S1_at5/113+22217138..22221790GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45095.1.S1_at--975--10391Chr03:22188450..22188474 (25 bp)
TTTTGTTTTTGCGAGTTCTTACTGA
LOC_Os03g40020
Os.45095.1.S1_at--975--7911Chr03:22188410..22188434 (25 bp)
GGTTGATTGGATCGACATTCTGTAC
LOC_Os03g40020
Os.45095.1.S1_at--636--7671Chr03:22188376..22188400 (25 bp)
GGGATTCTATGGGTTTTTGCTTATT
LOC_Os03g40020
Os.45095.1.S1_at--547--7211Chr03:22188268..22188292 (25 bp)
GTCGAAATTTATCAGGCATGCGGTT
LOC_Os03g40020
Os.45095.1.S1_at--517--4991Chr03:22188253..22188277 (25 bp)
GCATGCGGTTTTTGGTTTCTTGAAT
LOC_Os03g40020
Os.45095.1.S1_at--610--5651Chr03:22188216..22188240 (25 bp)
GACAGTACTCCTATATTCTTGGTGA
LOC_Os03g40020
Os.45095.1.S1_at--84--1311Chr03:22188061..22188085 (25 bp)
AGATGGCAACTACACGTCGAATGAT
LOC_Os03g40020
Os.45095.1.S1_at--668--5211Chr03:22188019..22188043 (25 bp)
GAATTCTGATGCTGATTCCACTGAA
LOC_Os03g40020
Os.45095.1.S1_at--944--4371Chr03:22187965..22187989 (25 bp)
CCAACTCATTTTTCTGTCAACACAT
LOC_Os03g40020
Os.45095.1.S1_at--626--2071Chr03:22187944..22187968 (25 bp)
ACATTTGCTAGATAGTTGCTACCCG
LOC_Os03g40020
Os.45095.1.S1_at--1034--6611Chr03:22187930..22187954 (25 bp)
GTTGCTACCCGATAAACGACATCTT
LOC_Os03g40020
Target Sequence 
TTTTGTTTTTGCGAGTTCTTACTGAATTTGGATAAGTTCTGGTTGATTGGATCGACATTCTGTACATTTGCAAGGGGATT
CTATGGGTTTTTGCTTATTGCTAATCAAATTATTTTGTGAGTTTTGGTTTATTGGATGGTGAGAAAGCAAGATTACATGG
ATTTTGCTTCATTGCTGATTTTGTCGAAATTTATCAGGCATGCGGTTTTTGGTTTCTTGAATACGAACTACACGGACAGT
ACTCCTATATTCTTGGTGATTTTGAAGTGTATTTGTTATTTTGGGGAGGTGGAATGGTTAATATTTTGTTCAAGGGGACA
CTTCTACAGATGTATACATTACTTTTGTCATTTTCAGCATAACAAAGAGATTTGGTAGATTCAGAATTCAGATGGCAACT
ACACGTCGAATGATGTATGCGAAGACATGGGGAATTCTGATGCTGATTCCACTGAAGAAAGCTAAACATAATTTTAATTT
ATTTACCAACTCATTTTTCTGTCAACACATTTGCTAGATAGTTGCTACCCGATAAACGACATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis