Browse Element(s) Details


Os.45831.1.S1_x_at

Description gb:AU069831
DB_XREF= gi:5004656
DB_XREF=AU069831
CLONE=E3947_1A
TID=Os.45831.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0032H19.20 (OSJNBb0032H19.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g031809/11hypothetical protein
LOC_Os01g022709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03150Os.56262.1.S1_at11/116+1171582..1174251expressed protein
LOC_Os06g03150OsAffx.7756.1.S1_at1/116+1171582..1174251expressed protein
LOC_Os06g03150OsAffx.8916.1.S1_x_at1/116+1171582..1174251expressed protein
LOC_Os06g03160NANA6+1179022..1181416hypothetical protein
LOC_Os06g03170Os.55563.1.S1_at11/116+1190562..1191470expressed protein
LOC_Os06g03180Os.45831.2.S1_at11/116+1193479..1198549hypothetical protein
LOC_Os06g03180Os.45831.1.S1_x_at9/116+1193479..1198549hypothetical protein
LOC_Os06g03180Os.45831.2.S1_x_at9/116+1193479..1198549hypothetical protein
LOC_Os06g03190NANA6+1201923..1203812retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03200OsAffx.4700.1.S1_at11/116+1205454..1207952hypothetical protein
LOC_Os06g03210OsAffx.15243.1.S1_at11/116+1208962..1209452hypothetical protein
LOC_Os06g03220Os.15900.1.A1_at11/116+1217465..1218963expressed protein
LOC_Os06g03230OsAffx.15244.1.S1_at11/116+1219785..1220327hypothetical protein
LOC_Os06g03240OsAffx.27439.1.S1_at11/116+1222061..1222645expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45831.1.S1_x_at--442--513Chr06:1197941..1198051 (25 bp)
ATCGATTTATATACTGCCCTGTCTT
LOC_Os06g03180
Os.45831.1.S1_x_at--1150--7893Chr06:1198067..1198091 (25 bp)
GGATTGTGGTCTGTTTCCAACTGAA
LOC_Os06g03180
Os.45831.1.S1_x_at--968--6873Chr06:1198109..1198133 (25 bp)
GTATTCTTTGCAACAACGGTGGCGA
LOC_Os06g03180
Os.45831.1.S1_x_at--150--3073Chr06:1198223..1198247 (25 bp)
AATCTCTGTCATTTTTTCCGTCTTG
LOC_Os06g03180
Os.45831.1.S1_x_at--245--10673Chr06:1198238..1198262 (25 bp)
TTCCGTCTTGTGTACAGCCCAATGA
LOC_Os06g03180
Os.45831.1.S1_x_at--175--1673Chr06:1198253..1198277 (25 bp)
AGCCCAATGACAGTGTGTTCGCAGC
LOC_Os06g03180
Os.45831.1.S1_x_at--1058--8793Chr06:1198268..1198292 (25 bp)
TGTTCGCAGCCATGTATTTTCTTGA
LOC_Os06g03180
Os.45831.1.S1_x_at--472--5013Chr06:1198309..1198333 (25 bp)
GCAGGAGTGCTCAACAAGCTGACTT
LOC_Os06g03180
Os.45831.1.S1_x_at--837--2473Chr06:1198505..1198529 (25 bp)
AACACTGCAGATGTGCCTGATGGAA
LOC_Os06g03180
Os.45831.1.S1_x_at--74--5473Chr06:1198595..1198619 (25 bp)
GAACTGTGGTCTTTTTTGCCAACAA
NONE
Os.45831.1.S1_x_at--1093--9893Chr06:1198657..1198681 (25 bp)
TACTACCGTGAACCTGTGATGGCTT
NONE
Target Sequence 
ATCGATTTATATACTGCCCTGTCTTATTNCTCTGGTGAATGGATTGTGGTCTGTTTCCAACTGAAGAATATGAAACAGAT
CGGTATTCTTTGCAACAACGGTGGCGACGAAATTAAAAATTTCGCTTTGGATTTGGGAAAGAAATTAAACAAAGTCTTAG
GAGACTGCAACTACAAAACAGTGTCATTTGATGAAAAATCTCTGTCATTTTTTCCGTCTTGTGTACAGCCCAATGACAGT
GTGTTCGCAGCCATGTATTTTCTTGAACATTTCATAGGTGTGGCAGGAGTGCTCAACAAGCTGACTTGGGATGAAAAGAT
GCGGGATCAATACATTAAATCTTACAGTCGAGGGATTTTNACATGCCTTATCCAGCACAAGGAAAACACTGCAGATGTGC
CTGATGGAATTTNAGCATTGNTCGAATAGCTATCTAGATGAATTTCTATCTTAGCACTTAGTATTTTNCTATGTGAACTG
TGGTCTTTTTTGCCAACAATGTGTACAGCTATTTAACTGTTGGTATTTGTGGTAAATACTACCGTGAACCTGTGATGGCT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45831.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis