Browse Element(s) Details

Os.15900.1.A1_at

Description

gb:AK108643.1
DB_XREF= gi:32993852
TID=Os.15900.1
CNT=6
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.15900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A12, full insert sequence.
FL= gb:AK108643.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03220	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03180	Os.45831.2.S1_at	11/11	6	+	1193479..1198549	hypothetical protein
LOC_Os06g03180	Os.45831.1.S1_x_at	9/11	6	+	1193479..1198549	hypothetical protein
LOC_Os06g03180	Os.45831.2.S1_x_at	9/11	6	+	1193479..1198549	hypothetical protein
LOC_Os06g03190	NA	NA	6	+	1201923..1203812	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03200	OsAffx.4700.1.S1_at	11/11	6	+	1205454..1207952	hypothetical protein
LOC_Os06g03210	OsAffx.15243.1.S1_at	11/11	6	+	1208962..1209452	hypothetical protein
LOC_Os06g03220	Os.15900.1.A1_at	11/11	6	+	1217465..1218963	expressed protein
LOC_Os06g03230	OsAffx.15244.1.S1_at	11/11	6	+	1219785..1220327	hypothetical protein
LOC_Os06g03240	OsAffx.27439.1.S1_at	11/11	6	+	1222061..1222645	expressed protein
LOC_Os06g03250	Os.10731.1.A1_a_at	11/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.45173.1.S1_x_at	6/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.46610.1.S1_x_at	4/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.31869.1.S1_at	3/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.47999.2.A1_x_at	2/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.31869.5.S1_x_at	2/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.20877.1.S1_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.48015.1.A1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.18229.1.S1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.8469.1.A1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.31869.4.S1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.45173.3.S1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.38764.1.S1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.47999.3.A1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03260	OsAffx.31069.1.S1_x_at	1/11	6	+	1243910..1245304	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.15900.1.A1_at--862--255	1	Chr06:1218029..1218053 (25 bp)	AACGATACCATCGTCTGGTTCAAAC	LOC_Os06g03220
Os.15900.1.A1_at--1147--857	1	Chr06:1218014..1218038 (25 bp)	TGGTTCAAACTCAACAACGGCTTCA	LOC_Os06g03220
Os.15900.1.A1_at--1022--193	1	Chr06:1217998..1218022 (25 bp)	ACGGCTTCACGTTGCTCAAGGATAC	LOC_Os06g03220
Os.15900.1.A1_at--1076--131	1	Chr06:1217895..1217919 (25 bp)	AGAGGACGTCTTCCACGTGTTGGTC	LOC_Os06g03220
Os.15900.1.A1_at--822--741	1	Chr06:1217879..1217903 (25 bp)	GTGTTGGTCATGGTGCACATCATCA	LOC_Os06g03220
Os.15900.1.A1_at--1005--373	1	Chr06:1217776..1217800 (25 bp)	CTAATGCTCAGTCTCCTTCTAATAA	LOC_Os06g03220
Os.15900.1.A1_at--978--35	1	Chr06:1217755..1217779 (25 bp)	ATAATGGTCCGGCACACACATTCTA	LOC_Os06g03220
Os.15900.1.A1_at--571--39	1	Chr06:1217720..1217744 (25 bp)	ATCACCATCGGCTATGGCTACAGTG	LOC_Os06g03220
Os.15900.1.A1_at--530--271	1	Chr06:1217664..1217688 (25 bp)	AAGCATAGGTTCTTCCGTTGTCCCT	LOC_Os06g03220
Os.15900.1.A1_at--1000--459	1	Chr06:1217615..1217639 (25 bp)	GCGACAAGCGTGACCAGTGGCGAAT	LOC_Os06g03220
Os.15900.1.A1_at--128--755	1	Chr06:1217599..1217623 (25 bp)	GTGGCGAATCTATGCCTGTGCAAAT	LOC_Os06g03220

Target Sequence

AACGATACCATCGTCTGGTTCAAACTCAACAACGGCTTCACGTTGCTCAAGGATACGTCGCACACGGAGGCGATGACGGT
GACCATCACAAACAGCAGCCAGATCATGGAGTACATAGAGCACCGGCTCAAACAAGAGGACGTCTTCCACGTGTTGGTCA
TGGTGCACATCATCACCCCCTCGACTAATCCGAATTCGCCTTCGCCTCCGCCTCCGCCTCCGCCTCCGTCTCCGGCTCCG
GCTCCGGCTCCTTCTAATGCTCAGTCTCCTTCTAATAATGGTCCGGCACACACATTCTACTGCTGGCCCATCACCATCGG
CTATGGCTACAGTGCCCTGCAAGACACCGACGATGTCGGCTGCAAAAGCATAGGTTCTTCCGTTGTCCCTGGCAACCAAA
CCAATAGGGCTAACGCGACAAGCGTGACCAGTGGCGAATCTATGCCTGTGCAAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis