Browse Element(s) Details

OsAffx.27439.1.S1_at

Description

tigr:9634.m00229
TID=OsAffx.27439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03240	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03180	Os.45831.2.S1_at	11/11	6	+	1193479..1198549	hypothetical protein
LOC_Os06g03180	Os.45831.1.S1_x_at	9/11	6	+	1193479..1198549	hypothetical protein
LOC_Os06g03180	Os.45831.2.S1_x_at	9/11	6	+	1193479..1198549	hypothetical protein
LOC_Os06g03190	NA	NA	6	+	1201923..1203812	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03200	OsAffx.4700.1.S1_at	11/11	6	+	1205454..1207952	hypothetical protein
LOC_Os06g03210	OsAffx.15243.1.S1_at	11/11	6	+	1208962..1209452	hypothetical protein
LOC_Os06g03220	Os.15900.1.A1_at	11/11	6	+	1217465..1218963	expressed protein
LOC_Os06g03230	OsAffx.15244.1.S1_at	11/11	6	+	1219785..1220327	hypothetical protein
LOC_Os06g03240	OsAffx.27439.1.S1_at	11/11	6	+	1222061..1222645	expressed protein
LOC_Os06g03250	Os.10731.1.A1_a_at	11/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.45173.1.S1_x_at	6/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.46610.1.S1_x_at	4/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.31869.1.S1_at	3/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.47999.2.A1_x_at	2/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.31869.5.S1_x_at	2/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.20877.1.S1_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.48015.1.A1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.18229.1.S1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.8469.1.A1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	OsAffx.31869.4.S1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.45173.3.S1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.38764.1.S1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03250	Os.47999.3.A1_x_at	1/11	6	+	1229749..1240848	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03260	OsAffx.31069.1.S1_x_at	1/11	6	+	1243910..1245304	retrotransposon protein, putative, unclassified
LOC_Os06g03270	NA	NA	6	+	1246146..1246769	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27439.1.S1_at--390--733	1	Chr06:1222154..1222178 (25 bp)	GTGAGGGAGGACCACTACTACTACA	LOC_Os06g03240
OsAffx.27439.1.S1_at--294--989	1	Chr06:1222169..1222193 (25 bp)	TACTACTACAACAGGACGGCGCCGG	LOC_Os06g03240
OsAffx.27439.1.S1_at--591--103	1	Chr06:1222245..1222269 (25 bp)	AGGTGCGGTACCTGTCCATGAAGAC	LOC_Os06g03240
OsAffx.27439.1.S1_at--161--753	1	Chr06:1222304..1222328 (25 bp)	GTGGACCTGGGCACCGACAACAAGA	LOC_Os06g03240
OsAffx.27439.1.S1_at--64--561	1	Chr06:1222319..1222343 (25 bp)	GACAACAAGACCTCCAATCAATTCC	LOC_Os06g03240
OsAffx.27439.1.S1_at--252--309	1	Chr06:1222334..1222358 (25 bp)	AATCAATTCCGCACGTGGTGGCAGC	LOC_Os06g03240
OsAffx.27439.1.S1_at--1058--691	1	Chr06:1222408..1222432 (25 bp)	GTATGGGCTGCCTCGATCATCATCG	LOC_Os06g03240
OsAffx.27439.1.S1_at--33--663	1	Chr06:1222481..1222505 (25 bp)	GTTGTGATCAAAACCCAGGTGCAGT	LOC_Os06g03240
OsAffx.27439.1.S1_at--1043--103	1	Chr06:1222497..1222521 (25 bp)	AGGTGCAGTTCAGGTACGGCCCTGC	LOC_Os06g03240
OsAffx.27439.1.S1_at--1107--363	1	Chr06:1222570..1222594 (25 bp)	CTTAACACGGTACTACTACGACAGT	LOC_Os06g03240
OsAffx.27439.1.S1_at--55--345	1	Chr06:1222591..1222615 (25 bp)	CAGTAAAACTGATGTGGGCCACCTT	LOC_Os06g03240

Target Sequence

GTGAGGGAGGACCACTACTACTACAACAGGACGGCGCCGGAGCGGCAGATCAACGTCACCATCACCGCCAACAACACCAG
CAAGCACGCCAAGGTGCGGTACCTGTCCATGAAGACCGAGGTGTGGCTGGACGACAAGGACTGGGTTCCGGTGGACCTGG
GCACCGACAACAAGACCTCCAATCAATTCCGCACGTGGTGGCAGCCGCCGGACAGCTCCACGCAGCTCACGGCGGGGGTC
AACGTCCTGGAGACGTATGGGCTGCCTCGATCATCATCGGCTCCGCCTCCGCCTCCAGGTAGCAGCAACGACAACAAGGA
CTACACGGTTGTGATCAAAACCCAGGTGCAGTTCAGGTACGGCCCTGCTCACACAAGGCTCTACAGCATCATCGTCACCT
GCCCCTGCAACACCAACTTAACACGGTACTACTACGACAGTAAAACTGATGTGGGCCACCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis