Browse Element(s) Details


Os.45954.1.S1_at

Description gb:NM_187696.1
DB_XREF= gi:34902477
GEN=OJ1743A09.18
TID=Os.45954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45954 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Putative mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (OJ1743A09.18), mRNA.
PROD=Putative mannitol dehydrogenase (NAD-dependentmannitol dehydrogenase)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1227011/11mannitol dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12250Os.21812.2.S1_a_at11/113+6413971..6417612Leucine Rich Repeat family protein, expressed
LOC_Os03g12260Os.26879.1.S1_at11/113+6422568..6424588Cytochrome P450 family protein, expressed
LOC_Os03g12270Os.45954.1.S1_at11/113+6432197..6434699mannitol dehydrogenase, putative, expressed
LOC_Os03g12280NANA3+6435583..6436190hypothetical protein
LOC_Os03g12290Os.12728.1.S1_at11/113+6437026..6441842Glutamine synthetase root isozyme 5, putative, expressed
LOC_Os03g12300Os.11686.2.S1_x_at11/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.11686.1.S1_at11/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.52150.1.S1_at2/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.52150.1.S1_x_at1/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12310OsAffx.20517.1.S1_at11/113+6459539..6466629retrotransposon protein, putative, unclassified
LOC_Os03g12310OsAffx.20517.2.S1_x_at7/113+6459539..6466629retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009617biological_processresponse to bacteria
GO:0009626biological_processhypersensitive response
GO:0018456molecular_functionaryl-alcohol dehydrogenase activity
GO:0046029molecular_functionmannitol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45954.1.S1_at--436--4331Chr03:6433862..6433886 (25 bp)
CCATCTCGCTGTCAAGTTCGGCAAG
LOC_Os03g12270
Os.45954.1.S1_at--979--5311Chr03:6433898..6433922 (25 bp)
GAAGGTGACCGTGATCAGCACCAGC
LOC_Os03g12270
Os.45954.1.S1_at--948--8831Chr03:6433909..6433933 (25 bp)
TGATCAGCACCAGCCCGTGGAAGGA
LOC_Os03g12270
Os.45954.1.S1_at--609--9091Chr03:6433972..6433996 (25 bp)
TGCTCAGCACCAACGCCGAACAGAT
LOC_Os03g12270
Os.45954.1.S1_at--1147--511Chr03:6434100..6434124 (25 bp)
ATCGACACGGTCTCGGCGGTGCACG
LOC_Os03g12270
Os.45954.1.S1_at--347--5551Chr03:6434188..6434212 (25 bp)
GAAAGCCGGTGCAACTAGCCCTGTA
LOC_Os03g12270
Os.45954.1.S1_at--886--9011Chr03:6434218..6434291 (25 bp)
TGCAATCAGGCCCATCACCAGTTGG
LOC_Os03g12270
Os.45954.1.S1_at--800--1231Chr03:6434286..6434310 (25 bp)
AGTTGGCCCGCGAATAGATTGGGCT
LOC_Os03g12270
Os.45954.1.S1_at--401--8351Chr03:6434307..6434331 (25 bp)
GGCTGGAGGCCCAATCAGAGCTAGA
LOC_Os03g12270
Os.45954.1.S1_at--771--9651Chr03:6434321..6434345 (25 bp)
TCAGAGCTAGATGGGCCGTGCTCAT
LOC_Os03g12270
Os.45954.1.S1_at--31--4011Chr03:6434514..6434538 (25 bp)
CGTGAGGTACAGGTTTGTGATCGAC
LOC_Os03g12270
Target Sequence 
CCATCTCGCTGTCAAGTTCGGCAAGGCGTTCGGCGTGAAGGTGACCGTGATCAGCACCAGCCCGTGGAAGGAAGCGGAGG
CCGTGGAGAGGCTTGGCGCCGACGCGTTCTTGCTCAGCACCAACGCCGAACAGATGAAGGCAGCTGCGGGCACCATGGAT
GGCATCATCGACACGGTCTCGGCGGTGCACGACCTGACGCCACTCATCACGCTGCTGCGGACTCACGGCCAGCTCGTCCC
GGTCGGATCGCCGGGAAAGCCGGTGCAACTAGCCCTGTACCCTCTGCAATCAGGCCCATCACCAGTTGGCCCGCGAATAG
ATTGGGCTGGAGGCCCAATCAGAGCTAGATGGGCCGTGCTCATGGTGTGCGATGTGGCAGATGGGAAGAGCGTGGCCGGG
AGCATGATCGGCGGGATGAGGGATACGCAGGAGATGGTCGACTTCGCCGTCGAGCACGGCGTCGCCGCCGAGGTGGAGGT
CATCGGCATGGAGGACGTCAACGGCGCGATGGAGAGGCTGCAGAAGGGAGACGTGAGGTACAGGTTTGTGATCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis