Browse Element(s) Details


Os.46002.1.S1_at

Description gb:CB679841
DB_XREF= gi:29683566
DB_XREF=OSJNEf03N13.f
CLONE=OSJNEf03N13
TID=Os.46002.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519D04.36 (P0519D04.36), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4949011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49460OsAffx.11530.1.S1_at5/111+28771340..28771795hypothetical protein
LOC_Os01g49470Os.27942.1.A1_at10/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49470OsAffx.27359.1.S1_x_at1/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49480OsAffx.23727.1.S1_x_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.23727.1.S1_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.9277.1.S1_x_at3/111+28790950..28791281hypothetical protein
LOC_Os01g49490Os.46002.1.S1_at11/111+28794537..28798019expressed protein
LOC_Os01g49490OsAffx.11531.1.S1_at10/111+28794537..28798019expressed protein
LOC_Os01g49500Os.37083.2.S1_at1/111+28803760..28804086retrotransposon protein, putative, unclassified
LOC_Os01g49510Os.15758.1.S1_a_at11/111+28806125..28809660expressed protein
LOC_Os01g49529Os.41662.1.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.1.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.41662.1.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.4.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.2.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.11986.3.S1_x_at1/111+28809781..28823023Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46002.1.S1_at--299--9531Chr01:28794837..28794861 (25 bp)
TCTAACAGCAAAATCATCCCTCCAT
LOC_Os01g49490
Os.46002.1.S1_at--91--4291Chr01:28794819..28794843 (25 bp)
CCTCCATGCCAATGTTCTTGTCATG
LOC_Os01g49490
Os.46002.1.S1_at--1096--7111Chr01:28794800..28794824 (25 bp)
GTCATGGAGCAGAATAGTTCAGCAA
LOC_Os01g49490
Os.46002.1.S1_at--534--5551Chr01:28794766..28794790 (25 bp)
GAAACGTGCAGCAGGTTGTCTGATT
LOC_Os01g49490
Os.46002.1.S1_at--200--9251Chr01:28794728..28794752 (25 bp)
TCCTGCAGATGCTGTGAATAGGTCT
LOC_Os01g49490
Os.46002.1.S1_at--273--5231Chr01:28794713..28794737 (25 bp)
GAATAGGTCTTATTGTACTGTAGAT
LOC_Os01g49490
Os.46002.1.S1_at--93--9931Chr01:28794698..28794722 (25 bp)
TACTGTAGATACTTGAGGCCCACGT
LOC_Os01g49490
Os.46002.1.S1_at--468--4551Chr01:28794681..28794705 (25 bp)
GCCCACGTAGGGTCTAATCTAGATA
LOC_Os01g49490
Os.46002.1.S1_at--324--9751Chr01:28794658..28794682 (25 bp)
TAATTTGATACTCGCATCTGCACAG
LOC_Os01g49490
Os.46002.1.S1_at--1013--471Chr01:28794643..28794667 (25 bp)
ATCTGCACAGCCAAAGCCCTGGGAA
LOC_Os01g49490
Os.46002.1.S1_at--769--2651Chr01:28794630..28794654 (25 bp)
AAGCCCTGGGAAACTATTGGCTGGG
LOC_Os01g49490
Target Sequence 
TCTAACAGCAAAATCATCCCTCCATGCCAATGTTCTTGTCATGGAGCAGAATAGTTCAGCAAAAATTCCAAGAAACGTGC
AGCAGGTTGTCTGATTTTTCAGTGTTGNTTCCTGCAGATGCTGTGAATAGGTCTTATTGTACTGTAGATACTTGAGGCCC
ACGTAGGGTCTAATCTAGATAATTTGATACTCGCATCTGCACAGCCAAAGCCCTGGGAAACTATTGGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis