Browse Element(s) Details


OsAffx.11530.1.S1_at

Description gb:NM_192121.1
DB_XREF= gi:34911325
GEN=P0519D04.32
TID=OsAffx.11530.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0519D04.32 (P0519D04.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g494605/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49420Os.46500.2.S1_at8/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49420Os.46500.1.S1_at5/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49430OsAffx.23726.1.S1_x_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49430OsAffx.23726.2.S1_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49440Os.28686.1.S1_at11/111+28758782..28760252expressed protein
LOC_Os01g49450NANA1+28768407..28769051hypothetical protein
LOC_Os01g49460OsAffx.11530.1.S1_at5/111+28771340..28771795hypothetical protein
LOC_Os01g49470Os.27942.1.A1_at10/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49470OsAffx.27359.1.S1_x_at1/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49480OsAffx.23727.1.S1_x_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.23727.1.S1_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.9277.1.S1_x_at3/111+28790950..28791281hypothetical protein
LOC_Os01g49490Os.46002.1.S1_at11/111+28794537..28798019expressed protein
LOC_Os01g49490OsAffx.11531.1.S1_at10/111+28794537..28798019expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11530.1.S1_at--698--9131Chr01:28771416..28771440 (25 bp)
TGCTGGCCACCCATGGCGTGCTCTG
LOC_Os01g49460
OsAffx.11530.1.S1_at--849--4611Chr01:28771469..28771493 (25 bp)
GCGAGGGTGCGTACCCACCGTCGAA
LOC_Os01g49460
OsAffx.11530.1.S1_at--1076--7771Chr01:28771474..28771498 (25 bp)
GGTGCGTACCCACCGTCGAATTGGC
LOC_Os01g49460
OsAffx.11530.1.S1_at--480--5191Chr01:28771491..28771515 (25 bp)
GAATTGGCCCGACGGTCCACCTGGA
LOC_Os01g49460
OsAffx.11530.1.S1_at--878--11Chr01:28771493..28771517 (25 bp)
ATTGGCCCGACGGTCCACCTGGAGG
LOC_Os01g49460
OsAffx.11530.1.S1_at--122--2631Chr01:28771894..28771918 (25 bp)
AACCGTGTTGGAACACGTCGTGCGT
NONE
OsAffx.11530.1.S1_at--953--2471Chr01:28771905..28771929 (25 bp)
AACACGTCGTGCGTGTATCGCCAAT
NONE
OsAffx.11530.1.S1_at--4--1911Chr01:28771908..28771932 (25 bp)
ACGTCGTGCGTGTATCGCCAATGTC
NONE
OsAffx.11530.1.S1_at--174--4671Chr01:28771915..28771939 (25 bp)
GCGTGTATCGCCAATGTCTCGAGGA
NONE
OsAffx.11530.1.S1_at--765--6891Chr01:28771919..28771943 (25 bp)
GTATCGCCAATGTCTCGAGGAAGTT
NONE
OsAffx.11530.1.S1_at--585--531Chr01:28771921..28771945 (25 bp)
ATCGCCAATGTCTCGAGGAAGTTGA
NONE
Target Sequence 
TGCTGGCCACCCATGGCGTGCTCTGCACCGTCGTCGCCACGCCGGCCACGGTGGCGAGGGTGCGTACCCACCGTCGAATT
GGCCCGACGGTCCACCTGGAGGCCGTGCTCGAGGAGAAGTCTGGCGAGCTTGCATTCCCGAGGACGAGGCAGGTGTTCAT
GCTGAACAACACGCACGCCATCGTGCGCCACGCCGTGCGCTCCAACCTCGCCATGTTCCTGCCGTCGGGATGGGCACGTG
CCTGGGAGGAGCGCATGGAGGGCTACGTCAAGAGCTACCTCGACATGTCGTGGGCGCCCATCGTATCACGCCTCGCCGCC
GGCGCCGCCACCACGGCGGCGACAAAGCCAGCCACCNNNNNNGNGNTNCNGNNNNNNNNNCAGCCCGGTGCTCCGCCACG
TGCTCCGGCGAACCGTGTTGGAACACGTCGTGCGTGTATCGCCAATGTCTCGAGGAAGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis