Browse Element(s) Details


Os.28686.1.S1_at

Description gb:AK111204.1
DB_XREF= gi:32996413
TID=Os.28686.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519D04.29 (P0519D04.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-178-E08, full insert sequence.
FL= gb:AK111204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4944011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49410Os.20803.1.S1_a_at11/111+28744177..28745448expressed protein
LOC_Os01g49420Os.46500.2.S1_at8/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49420Os.46500.1.S1_at5/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49430OsAffx.23726.1.S1_x_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49430OsAffx.23726.2.S1_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49440Os.28686.1.S1_at11/111+28758782..28760252expressed protein
LOC_Os01g49450NANA1+28768407..28769051hypothetical protein
LOC_Os01g49460OsAffx.11530.1.S1_at5/111+28771340..28771795hypothetical protein
LOC_Os01g49470Os.27942.1.A1_at10/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49470OsAffx.27359.1.S1_x_at1/111+28774735..28785594CHY zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28686.1.S1_at--575--10431Chr01:28759446..28759470 (25 bp)
TTAGAGAGCGGAAGCGCCGTCCCTC
LOC_Os01g49440
Os.28686.1.S1_at--78--8651Chr01:28759508..28759532 (25 bp)
TGGGCGAGACGAGCGGACACCACAC
LOC_Os01g49440
Os.28686.1.S1_at--139--3571Chr01:28760002..28760026 (25 bp)
CATCACATCCTCCTAGCTTTATGAA
LOC_Os01g49440
Os.28686.1.S1_at--934--2011Chr01:28760044..28760068 (25 bp)
ACTAGGTTTAGTGCGTCGAGTTGAT
LOC_Os01g49440
Os.28686.1.S1_at--587--8871Chr01:28760065..28760089 (25 bp)
TGATGATAGGTACCTGTGCTGTGCT
LOC_Os01g49440
Os.28686.1.S1_at--421--9071Chr01:28760086..28760110 (25 bp)
TGCTTGCAATGTCCCATCTTTTGAA
LOC_Os01g49440
Os.28686.1.S1_at--791--9551Chr01:28760102..28760126 (25 bp)
TCTTTTGAACTTTCTCCTCCTACGA
LOC_Os01g49440
Os.28686.1.S1_at--723--1071Chr01:28760145..28760169 (25 bp)
AGGGCTTTGGTTTCCAGCTGATGTA
LOC_Os01g49440
Os.28686.1.S1_at--269--4591Chr01:28760185..28760209 (25 bp)
GCGCATGTGTGCTTGTATTGTTGTA
LOC_Os01g49440
Os.28686.1.S1_at--1038--7051Chr01:28760207..28760231 (25 bp)
GTAATCTAGTCCTAATCCATCAAAA
LOC_Os01g49440
Os.28686.1.S1_at--1073--2431Chr01:28760228..28760252 (25 bp)
AAAAGGCTGCCATGCCTTGCACTGT
LOC_Os01g49440
Target Sequence 
TTAGAGAGCGGAAGCGCCGTCCCTCGGCCCGCGGTAGCACGGCGGCGTCGCCCACGACGGCGTGGGCGAGACGAGCGGAC
ACCACACGGGGTGGCGGCGAGCGACCGCCGTTCGCGGTGGCACTCGCGGCGGAGGAGATCGAGGAGGACATGTACGCCCT
GACCGGCGGCCGGCCGCGGCGGCGGCCTCGGAAACGGCCTCGCGTCGTCCAGCGGCAGCTCGATTCGCTGTTCCCGGGGC
TGTGGCTGACCGAGATCACCGCCGACGCCTACAAGGTCCCCGACGACTAGCACCACCACCCCAGCACCAGCTCCGGCTGG
CCAGCCGGCCAGTCAGCTCCACACTTTCTTCATCACATCCTCCTAGCTTTATGAATTGAAAAGAAAAATGTAACTAGGTT
TAGTGCGTCGAGTTGATGATAGGTACCTGTGCTGTGCTTGCAATGTCCCATCTTTTGAACTTTCTCCTCCTACGAAAAAA
GATCTGATCGATCAGGGCTTTGGTTTCCAGCTGATGTATTTATGCACAGTGGAGCGCATGTGTGCTTGTATTGTTGTAAT
CTAGTCCTAATCCATCAAAAGGCTGCCATGCCTTGCACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis