Browse Element(s) Details


OsAffx.23726.1.S1_x_at

Description gb:NM_192117.1
DB_XREF= gi:34911317
GEN=P0519D04.28
TID=OsAffx.23726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) similar to HEAT SHOCK COGNATE 70 KD PROTEIN (P0519D04.28), mRNA.
PROD=similar to HEAT SHOCK COGNATE 70 KD PROTEIN
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4943011/11Heat shock cognate 70 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49390OsAffx.11529.1.S1_at11/111+28730450..28731541IPP transferase family protein, expressed
LOC_Os01g49400OsAffx.9280.1.S1_at11/111+28733226..28733741hypothetical protein
LOC_Os01g49410Os.20803.1.S1_a_at11/111+28744177..28745448expressed protein
LOC_Os01g49420Os.46500.2.S1_at8/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49420Os.46500.1.S1_at5/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49430OsAffx.23726.1.S1_x_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49430OsAffx.23726.2.S1_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49440Os.28686.1.S1_at11/111+28758782..28760252expressed protein
LOC_Os01g49450NANA1+28768407..28769051hypothetical protein
LOC_Os01g49460OsAffx.11530.1.S1_at5/111+28771340..28771795hypothetical protein
LOC_Os01g49470Os.27942.1.A1_at10/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49470OsAffx.27359.1.S1_x_at1/111+28774735..28785594CHY zinc finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23726.1.S1_x_at--311--7951Chr01:28753332..28753356 (25 bp)
GGATCCCATCAAGAAGTGCCTCACG
LOC_Os01g49430
OsAffx.23726.1.S1_x_at--821--6551Chr01:28753227..28753251 (25 bp)
GATTCAGGACCTGTTCGACGGGAAG
LOC_Os01g49430
OsAffx.23726.1.S1_x_at--844--9291Chr01:28753198..28753222 (25 bp)
TCCGCAAGGACATCAGCTCTGACGA
LOC_Os01g49430
OsAffx.23726.1.S1_x_at--1154--10831Chr01:28753121..28753145 (25 bp)
TTGGTGGACCTGTTCCTATTCGACG
LOC_Os01g49430
OsAffx.23726.1.S1_x_at--865--891Chr01:28753062..28753086 (25 bp)
AGGCGCCATGGCAGTGATGATACCA
LOC_Os01g49430
OsAffx.23726.1.S1_x_at--74--6291Chr01:28753047..28753071 (25 bp)
GATGATACCAAAGAACACCCCGATT
LOC_Os01g49430
OsAffx.23726.1.S1_x_at--1135--4231Chr01:28753028..28753052 (25 bp)
CCGATTCCCGTCATGGCGAGGGAGA
LOC_Os01g49430
OsAffx.23726.1.S1_x_at--1018--2351Chr01:28752875..28752899 (25 bp)
AAAGCCCGGAGTGAAGCTCTCTGTG
LOC_Os01g49430
OsAffx.23726.1.S1_x_at--979--2691Chr01:28752862..28752886 (25 bp)
AAGCTCTCTGTGTCTGTGTGCTTCA
LOC_Os01g49430
OsAffx.23726.1.S1_x_at--156--7471Chr01:28752847..28752871 (25 bp)
GTGTGCTTCAGCATCGATGCCGACG
LOC_Os01g49430
OsAffx.23726.1.S1_x_at--584--9571Chr01:28752819..28752843 (25 bp)
TCTTGACGGTCTCTGCGAGGGACAA
LOC_Os01g49430
Target Sequence 
GGATCCCATCAAGAAGTGCCTCACGGGCGCCAAGATGGACAGGAGCAGCGTGGACGACGTCGTCTTCGTCGGCGGATCAA
CCCGAATCCCTCGCGTGCGCCGTCTGATTCAGGACCTGTTCGACGGGAAGGAGCTCCGCAAGGACATCAGCTCTGACGAG
GCGGCGGCGTGCGGTGCTGCCACCATGGCCAGTCTCGGCAGCGACGACAGCTTGGTGGACCTGTTCCTATTCGACGCCAC
GCCGCACTCGCTCGGCGTGGCGGCGGCCGGAGGCGCCATGGCAGTGATGATACCAAAGAACACCCCGATTCCCGTCATGG
CGAGGGAGAATACTATCTCCATCCAGCCCAATCACAAGAAAGCAAAGCCCGGAGTGAAGCTCTCTGTGTCTGTGTGCTTC
AGCATCGATGCCGACGGCGTCTTGACGGTCTCTGCGAGGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23726.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis