Browse Element(s) Details


OsAffx.11529.1.S1_at

Description gb:NM_192112.1
DB_XREF= gi:34911307
GEN=P0519D04.23
TID=OsAffx.11529.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cytokinin synthase -like protein (P0519D04.23), mRNA.
PROD=cytokinin synthase -like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4939011/11IPP transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49360OsAffx.11528.1.S1_at11/111+28703433..28706534FAD-binding domain-containing protein, putative, expressed
LOC_Os01g49370OsAffx.24369.13.S1_s_at11/111+28707937..28710487expressed protein
LOC_Os01g49380Os.50385.1.S1_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.50385.1.S1_s_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.45956.1.S1_x_at9/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.7467.1.S1_at1/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49390OsAffx.11529.1.S1_at11/111+28730450..28731541IPP transferase family protein, expressed
LOC_Os01g49400OsAffx.9280.1.S1_at11/111+28733226..28733741hypothetical protein
LOC_Os01g49410Os.20803.1.S1_a_at11/111+28744177..28745448expressed protein
LOC_Os01g49420Os.46500.2.S1_at8/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49420Os.46500.1.S1_at5/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49430OsAffx.23726.1.S1_x_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49430OsAffx.23726.2.S1_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009691biological_processcytokinin biosynthesis
GO:0009824molecular_functionadenylate dimethylallyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11529.1.S1_at--700--4651Chr01:28730965..28730989 (25 bp)
GCGTGACCCTTTCGCGGACGCCGAT
LOC_Os01g49390
OsAffx.11529.1.S1_at--929--10611Chr01:28730975..28730999 (25 bp)
TTCGCGGACGCCGATGTCGGGTACC
LOC_Os01g49390
OsAffx.11529.1.S1_at--302--5791Chr01:28731044..28731068 (25 bp)
GACGACGATGTTCTCGACGAATACC
LOC_Os01g49390
OsAffx.11529.1.S1_at--820--8791Chr01:28731052..28731076 (25 bp)
TGTTCTCGACGAATACCTCGACCGG
LOC_Os01g49390
OsAffx.11529.1.S1_at--797--6171Chr01:28731110..28731134 (25 bp)
GAGGAGCTCGAGGAATACTTCGCGA
LOC_Os01g49390
OsAffx.11529.1.S1_at--979--4031Chr01:28731118..28731142 (25 bp)
CGAGGAATACTTCGCGACGACGTCG
LOC_Os01g49390
OsAffx.11529.1.S1_at--491--3231Chr01:28731220..28731244 (25 bp)
CAAGAGCCTCGACGCGGCGATAGAC
LOC_Os01g49390
OsAffx.11529.1.S1_at--645--6391Chr01:28731247..28731271 (25 bp)
GATCAAGGCCAACACGCGGGTCCTC
LOC_Os01g49390
OsAffx.11529.1.S1_at--2--9351Chr01:28731270..28731294 (25 bp)
TCGCGGCCCGCCAGGTCGGCAAGAT
LOC_Os01g49390
OsAffx.11529.1.S1_at--434--2771Chr01:28731290..28731314 (25 bp)
AAGATCCGACGCATGGCCGACGTTT
LOC_Os01g49390
OsAffx.11529.1.S1_at--822--9331Chr01:28731429..28731453 (25 bp)
TCGCCGCGATGCGTCAGTTCGTCGG
LOC_Os01g49390
Target Sequence 
GCGTGACCCTTTCGCGGACGCCGATGTCGGGTACCGGCCGGCGCTCCGGTTCCCGTGCTGCCTCCTCTGGGTCGACGTCG
ACGACGATGTTCTCGACGAATACCTCGACCGGCGCGTGGACGACATGGTCGGCGAGGGGATGGTCGAGGAGCTCGAGGAA
TACTTCGCGACGACGTCGGCCTCGGAGCGGGCCTCGCACGCCGGGCTGGGCAAGGCCATCGGCGTGCCGGAGCTCGGCGA
CTACTTCGCCGGGCGCAAGAGCCTCGACGCGGCGATAGACGAGATCAAGGCCAACACGCGGGTCCTCGCGGCCCGCCAGG
TCGGCAAGATCCGACGCATGGCCGACGTTTGGGGCTGGCCCATCCGCCGCCTCGACGCCACGGCCACCATCCGGGCGCGG
CTCTCCGGCGCCGGCCGCGCCGCCGAGGCCGCCGCGTGGGAGCGCGACGTGCGCGGGCCAGGCCTCGCCGCGATGCGTCA
GTTCGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis