Browse Element(s) Details


Os.46275.1.S1_at

Description gb:CA755860
DB_XREF= gi:25799899
DB_XREF=BR030029000_PLATE_H03_24_030.ab1
CLONE=BR030029000_PLATE_H03_24_030.ab1
TID=Os.46275.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0005F01.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1173010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11690NANA10+6222373..6229043retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11696Os.45173.1.S1_x_at1/1110+6231780..6234123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11702NANA10+6234388..6238815retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11710Os.47999.3.S1_x_at11/1110+6244035..6244523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11710OsAffx.20691.1.S1_x_at1/1110+6244035..6244523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11720OsAffx.18229.1.S1_x_at11/1110+6245410..6246039hypothetical protein
LOC_Os10g11720OsAffx.18229.1.S1_at11/1110+6245410..6246039hypothetical protein
LOC_Os10g11730Os.46275.1.S1_at10/1110+6249730..6251992expressed protein
LOC_Os10g11740NANA10+6257441..6259614hypothetical protein
LOC_Os10g11750Os.46860.2.S1_at11/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11750Os.46860.2.S1_x_at11/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11750Os.46860.1.S1_at10/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46275.1.S1_at--451--9251Chr10:6249779..6249803 (25 bp)
TCCTAGCAGCACTGGCAGTCGTGGT
LOC_Os10g11730
Os.46275.1.S1_at--665--7271Chr10:6249888..6249912 (25 bp)
GTGCCTGAACGACCTGATGCCATGC
LOC_Os10g11730
Os.46275.1.S1_at--270--6351Chr10:6249903..6249927 (25 bp)
GATGCCATGCGCGTCCGTGTACGAC
LOC_Os10g11730
Os.46275.1.S1_at--264--2171Chr10:6250025..6250049 (25 bp)
ACACCAGGCAGGTCGGGAGCAACGC
LOC_Os10g11730
Os.46275.1.S1_at--1003--691Chr10:6250069..6250093 (25 bp)
ATGTTCGCCCGGTGCAAGATCCCTG
LOC_Os10g11730
Os.46275.1.S1_at--130--2591NONE
AACGGGCAAGCAGGTCATGGAACAT
NONE
Os.46275.1.S1_at--89--7131Chr10:6251167..6251191 (25 bp)
GTCATGGAACATCGGCAGGCTACTC
LOC_Os10g11730
Os.46275.1.S1_at--311--2751Chr10:6251816..6251840 (25 bp)
AAGAAATGCCTCACCTCACTCGAGG
LOC_Os10g11730
Os.46275.1.S1_at--1080--9351Chr10:6251835..6251859 (25 bp)
TCGAGGTTGACCGAGGCATTCCGGA
LOC_Os10g11730
Os.46275.1.S1_at--207--10391Chr10:6251922..6251946 (25 bp)
TTTTCCATATTCATCTCCCAGTTCA
LOC_Os10g11730
Os.46275.1.S1_at--873--9311Chr10:6251937..6251961 (25 bp)
TCCCAGTTCAGTGCATGTAACCACA
LOC_Os10g11730
Target Sequence 
TCCTAGCAGCACTGGCAGTCGTGGTGGCCGCGGCCACGGCGGCGGCGGCGGGGCTACCGCCGCTGCCATCCACAATGCCG
GCGGACGTGCCGCAGCCGGAGATCCCGCCGTGCCTGAACGACCTGATGCCATGCGCGTCCGTGTACGACGACAGCTCCAT
GCTGGGGCCGTGCTGCGACGCGCTGGGGAAGGTGTTCAAGAGCGATCGGGCGTGCCTCTGCCAGATCTGGGAGATGGCCA
GAAACGACACCAGGCAGGTCGGGAGCAACGCCCTCGACGGCGATCAGCANATGTTCGCCCGGTGCAAGATCCCTGGCGCT
TCCTCCACCATCTGCGACAACGGGCAAGCAGGTCATGGAACATCGGCAGGCTACTCCTCGACAGNNNNNNNNNNNNNNNN
NNNNNNNNNGCTCCCAAGCAAGAAATGCCTCACCTCACTCGAGGTTGACCGAGGCATTCCGGATCTTTCTTCTCCTTNNA
ATACTGTTCATTTTGGGAGTGTGAAGCACACTTTGGAAGACATCATTTTCCATATTCATCTCCCAGTTCAGTGCATGTAA
CCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis