Browse Element(s) Details


Os.46860.2.S1_at

Description gb:NM_195322.1
DB_XREF= gi:37532003
TID=Os.46860.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0005F01.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0005F01.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1175011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11702NANA10+6234388..6238815retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11710Os.47999.3.S1_x_at11/1110+6244035..6244523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11710OsAffx.20691.1.S1_x_at1/1110+6244035..6244523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11720OsAffx.18229.1.S1_x_at11/1110+6245410..6246039hypothetical protein
LOC_Os10g11720OsAffx.18229.1.S1_at11/1110+6245410..6246039hypothetical protein
LOC_Os10g11730Os.46275.1.S1_at10/1110+6249730..6251992expressed protein
LOC_Os10g11740NANA10+6257441..6259614hypothetical protein
LOC_Os10g11750Os.46860.2.S1_at11/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11750Os.46860.2.S1_x_at11/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11750Os.46860.1.S1_at10/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11770OsAffx.30393.1.S1_at2/1110+6277934..6278308hypothetical protein
LOC_Os10g11780Os.49923.1.S1_at1/1110+6279355..6282068hypothetical protein
LOC_Os10g11794OsAffx.31892.2.S1_x_at11/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.31892.2.S1_at11/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.7216.1.S1_at2/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.24431.1.S1_at2/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.16438.1.S1_at1/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.31892.5.S1_x_at1/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46860.2.S1_at--360--7591Chr10:6262673..6262847 (25 bp)
GGGCATCAAGGAGGCACGAATCATG
LOC_Os10g11750
Os.46860.2.S1_at--760--3211Chr10:6262834..6262853 (20 bp)
CAAGGAGGCACGAATCATGCCGTTA
LOC_Os10g11750
Os.46860.2.S1_at--187--8011Chr10:6262834..6262856 (23 bp)
GGAGGCACGAATCATGCCGTTAGTA
LOC_Os10g11750
Os.46860.2.S1_at--18--1851Chr10:6262838..6262862 (25 bp)
ACGAATCATGCCGTTAGTAGTTTGA
LOC_Os10g11750
Os.46860.2.S1_at--1058--3051Chr10:6262841..6262865 (25 bp)
AATCATGCCGTTAGTAGTTTGAAAA
LOC_Os10g11750
Os.46860.2.S1_at--1003--39710Chr11:24854247..24854272 (24 bp)
CGTGCTAACGAAAACCGAGAAAATG
NONE
Os.46860.2.S1_at--1111--5952Chr10:6263209..6263232 (24 bp)
GAGAAAATGCGGTCCCAATTAGCAA
LOC_Os10g11750
Os.46860.2.S1_at--1026--3011Chr10:6263213..6263237 (25 bp)
AATGCGGTCCCAATTAGCAATTGAC
LOC_Os10g11750
Os.46860.2.S1_at--561--9495Chr10:6263243..6263267 (25 bp)
TCTGCGCTCCAAAATAACCTTATCG
LOC_Os10g11750
Os.46860.2.S1_at--1139--4555Chr10:6263246..6263270 (25 bp)
GCGCTCCAAAATAACCTTATCGATG
LOC_Os10g11750
Os.46860.2.S1_at--383--3071Chr10:6263255..6263279 (25 bp)
AATAACCTTATCGATGCACAACGGG
LOC_Os10g11750
Target Sequence 
GGGCATCAAGGAGGCACGAATCATGCCGTTAGTAGTTTGAAAAACGTGCTAACGAAAACCGAGAAAATGCGGTCCCAATT
AGCAATTGACATTGCTCTGCGCTCCAAAATAACCTTATCGATGCACAACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46860.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis