Browse Element(s) Details


Os.49923.1.S1_at

Description gb:AK119372.1
DB_XREF= gi:37988995
TID=Os.49923.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-A02, full insert sequence.
FL= gb:AK119372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g315603/11hypothetical protein
LOC_Os10g117801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31546NANA3+17938060..17938731hypothetical protein
LOC_Os03g31550Os.10786.1.S1_at11/113+17940519..17953383Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain containing protein, expressed
LOC_Os03g31560OsAffx.18078.1.S1_at4/113+17959358..17966409hypothetical protein
LOC_Os03g31560Os.49923.1.S1_at3/113+17959358..17966409hypothetical protein
LOC_Os03g31570Os.7167.1.S1_at11/113+17971044..17975559proline-rich family protein, putative, expressed
LOC_Os03g31594Os.6505.1.S1_at11/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31594OsAffx.3382.1.S1_at11/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31594OsAffx.9818.1.S1_x_at1/113+17981642..17996775jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49923.1.S1_at--1036--9673Chr03:17965854..17965878 (25 bp)
TCACTATCGCTCAGGGAACACAGGA
LOC_Os03g31560
Os.49923.1.S1_at--749--2712Chr03:17965921..17965945 (25 bp)
AAGCATTGTCTCAGTGTCTCACATG
LOC_Os03g31560
Os.49923.1.S1_at--1089--2873Chr03:17966216..17966240 (25 bp)
AAGGGACTACCAGAAACTGCTGAAG
LOC_Os03g31560
Os.49923.1.S1_at--54--2792Chr10:483938..483961 (24 bp)
AAGAGGAAGGCCTACACCTACAGCA
NONE
Os.49923.1.S1_at--398--5653Chr03:17966522..17966545 (24 bp)
GACAGCTCTTAATTCATCTACACAA
NONE
Os.49923.1.S1_at--1148--8895Chr03:17966550..17966574 (25 bp)
TGAGTTGTCGACGTGCAATCCATCT
NONE
Os.49923.1.S1_at--592--5194Chr03:17966564..17966588 (25 bp)
GCAATCCATCTCAAGACTTTTGCTT
NONE
Os.49923.1.S1_at--817--7035Chr03:17966597..17966621 (25 bp)
GTACAAAGCTATGTCCCAGCTAGAA
NONE
Os.49923.1.S1_at--104--8273Chr03:17966629..17966653 (25 bp)
GGCAGTTGTGAAATTACCCAGGACT
NONE
Os.49923.1.S1_at--162--10432Chr03:17966642..17966666 (25 bp)
TTACCCAGGACTAAAGAACCAAGAT
NONE
Os.49923.1.S1_at--171--6435Chr03:17966664..17966688 (25 bp)
GATCTTTTGTTCATGGCTTTTTGTC
NONE
Target Sequence 
TCACTATCGCTCAGGGAACACAGGACACCCCAACTAGCAAATCAAGTTCTTCAACACCTACCAAGAAAAGCATTGTCTCA
GTGTCTCACATGCAGTCTAGCAGGACCAAACCTAAAACTGATGATAAGCCCAAAACTGACACAAAAGCTGAAGAAAACAT
CTCACATGATAAATCTTCAATTGTTGTCCTGCCTGATACTGCTGAAAATATGGGAAAGGGACTACCAGAAACTGCTGAAG
AAGCCAAACAAGCAACCCCATCCTTCCCTACACATACCCCAGCCAAAAAAAGAGGAAGGCCTACACCTACAGCAACACCT
CCGGTTGCTAAGAAATTGTTCAAGGATGGTGCCAAGCAAAAAGGCAATGACAGCTCTTAATTCATCTACACAATGAATGA
GTTGTCGACGTGCAATCCATCTCAAGACTTTTGCTTATATATATGTACAAAGCTATGTCCCAGCTAGAAGACAGATGGCA
GTTGTGAAATTACCCAGGACTAAAGAACCAAGATCTTTTGTTCATGGCTTTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis