Browse Element(s) Details


Os.6505.1.S1_at

Description gb:AK059145.1
DB_XREF= gi:32969163
TID=Os.6505.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6505 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-A12, full insert sequence.
FL= gb:AK059145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3159411/11jmjC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31560OsAffx.18078.1.S1_at4/113+17959358..17966409hypothetical protein
LOC_Os03g31560Os.49923.1.S1_at3/113+17959358..17966409hypothetical protein
LOC_Os03g31570Os.7167.1.S1_at11/113+17971044..17975559proline-rich family protein, putative, expressed
LOC_Os03g31594Os.6505.1.S1_at11/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31594OsAffx.3382.1.S1_at11/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31594OsAffx.9818.1.S1_x_at1/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31620OsAffx.11386.1.S1_x_at4/113+18000919..18005212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31620OsAffx.19821.1.S1_x_at2/113+18000919..18005212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31620OsAffx.19821.1.S1_at2/113+18000919..18005212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31630OsAffx.3383.1.S1_at11/113+18007912..18010278Subtilase family protein
LOC_Os03g31634Os.57189.1.S1_at1/113+18014639..18016131hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6505.1.S1_at--983--31Chr03:17996336..17996360 (25 bp)
ATTGGGCTGATATCGCTCTGGGATA
LOC_Os03g31594
Os.6505.1.S1_at--699--6491Chr03:17996357..17996381 (25 bp)
GATAGACTTAAGTTTCGACAGTTCA
LOC_Os03g31594
Os.6505.1.S1_at--590--9651Chr03:17996391..17996415 (25 bp)
TCAGACATCACCATGGTGTCGATTT
LOC_Os03g31594
Os.6505.1.S1_at--529--7531Chr03:17996473..17996497 (25 bp)
GTGGCAATTGACTTGGAATAGCTTT
LOC_Os03g31594
Os.6505.1.S1_at--447--10031Chr03:17996556..17996580 (25 bp)
TAGTTATACCTTCTTGGTCGGTCTG
LOC_Os03g31594
Os.6505.1.S1_at--845--7171Chr03:17996576..17996600 (25 bp)
GTCTGTTGTACCGTGGCATGAATGT
LOC_Os03g31594
Os.6505.1.S1_at--561--7271Chr03:17996616..17996640 (25 bp)
GTGCCATAGCTCAAACCGAAGTCAT
LOC_Os03g31594
Os.6505.1.S1_at--899--9431Chr03:17996647..17996671 (25 bp)
TCGGTTTAATCGACGCGCTATAACT
LOC_Os03g31594
Os.6505.1.S1_at--1024--7431Chr03:17996698..17996722 (25 bp)
GTGTACTTTTACATCACTCAACTGT
LOC_Os03g31594
Os.6505.1.S1_at--97--2011Chr03:17996713..17996737 (25 bp)
ACTCAACTGTATATTTTGGTCCGTT
LOC_Os03g31594
Os.6505.1.S1_at--654--10851Chr03:17996728..17996752 (25 bp)
TTGGTCCGTTTGTCTCAACATCTAA
LOC_Os03g31594
Target Sequence 
ATTGGGCTGATATCGCTCTGGGATAGACTTAAGTTTCGACAGTTCAAGAATCACCTCAGACATCACCATGGTGTCGATTT
TGTTCATATGTGGGGTGATTGCCTTCACTAAAATGATGTGATTGTTTGTTGCTGATAGTGGCAATTGACTTGGAATAGCT
TTGATGAAGTTATGGCTCATTCTGATGNTTGTTAATTTTGAACTGCCAGTGATTTTGAAATAGTTATACCTTCTTGGTCG
GTCTGTTGTACCGTGGCATGAATGTATTCANTAGATCAGCGTGCCATAGCTCAAACCGAAGTCATATTTTGTCGGTTTAA
TCGACGCGCTATAACTCAAAAGTTGCTCGAAATTGTATTTCTGTGTACTTTTACATCACTCAACTGTATATTTTGGTCCG
TTTGTCTCAACATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis