Browse Element(s) Details


OsAffx.3382.1.S1_at

Description tigr:9631.m03106
TID=OsAffx.3382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3159411/11jmjC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31560OsAffx.18078.1.S1_at4/113+17959358..17966409hypothetical protein
LOC_Os03g31560Os.49923.1.S1_at3/113+17959358..17966409hypothetical protein
LOC_Os03g31570Os.7167.1.S1_at11/113+17971044..17975559proline-rich family protein, putative, expressed
LOC_Os03g31594Os.6505.1.S1_at11/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31594OsAffx.3382.1.S1_at11/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31594OsAffx.9818.1.S1_x_at1/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31620OsAffx.11386.1.S1_x_at4/113+18000919..18005212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31620OsAffx.19821.1.S1_x_at2/113+18000919..18005212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31620OsAffx.19821.1.S1_at2/113+18000919..18005212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31630OsAffx.3383.1.S1_at11/113+18007912..18010278Subtilase family protein
LOC_Os03g31634Os.57189.1.S1_at1/113+18014639..18016131hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3382.1.S1_at--771--9191Chr03:17981994..17982018 (25 bp)
TGCCTACCGCGAGAGCGGAGCTGAT
LOC_Os03g31594
OsAffx.3382.1.S1_at--329--1511Chr03:17982742..17982766 (25 bp)
AGCACGACGAGCAGAATGATGATGG
LOC_Os03g31594
OsAffx.3382.1.S1_at--559--6251Chr03:17982762..17982786 (25 bp)
GATGGTGCTGAAAAATCGGATAATC
LOC_Os03g31594
OsAffx.3382.1.S1_at--182--7951Chr03:17982779..17982803 (25 bp)
GGATAATCAAGTTGTGGATTCTCTT
LOC_Os03g31594
OsAffx.3382.1.S1_at--559--7931Chr03:17982794..17982818 (25 bp)
GGATTCTCTTAATGAACCCAACAGA
LOC_Os03g31594
OsAffx.3382.1.S1_at--1017--5031Chr03:17982861..17982885 (25 bp)
GCAGAGCAGGAGGACAGTAACCAAC
LOC_Os03g31594
OsAffx.3382.1.S1_at--782--5631Chr03:17982873..17982897 (25 bp)
GACAGTAACCAACTCTCCAACGGGA
LOC_Os03g31594
OsAffx.3382.1.S1_at--848--9451Chr03:17982886..17982910 (25 bp)
TCTCCAACGGGAAACACCTTGGCGA
LOC_Os03g31594
OsAffx.3382.1.S1_at--87--7611Chr03:17982894..17982918 (25 bp)
GGGAAACACCTTGGCGAAAACAATG
LOC_Os03g31594
OsAffx.3382.1.S1_at--200--7691Chr03:17982919..17982943 (25 bp)
GGGTAATTACTCAGCCTTCAGTGTG
LOC_Os03g31594
OsAffx.3382.1.S1_at--26--3151Chr03:17982923..17982947 (25 bp)
AATTACTCAGCCTTCAGTGTGTTCT
LOC_Os03g31594
Target Sequence 
TGCCTACCGCGAGAGCGGAGCTGATAATGACGATGATGGCGGCGGCGACGATGAGCACGACGAGCAGAATGATGATGGTG
CTGAAAAATCGGATAATCAAGTTGTGGATTCTCTTAATGAACCCAACAGAAGTAATACAGGGAAGAAGCGGGGAAGACCA
AAGAAAGTGAAAGCAGAGCAGGAGGACAGTAACCAACTCTCCAACGGGAAACACCTTGGCGAAAACAATGGGGTAATTAC
TCAGCCTTCAGTGTGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis