Browse Element(s) Details


Os.7167.1.S1_at

Description gb:AK068917.1
DB_XREF= gi:32978941
TID=Os.7167.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002L14, full insert sequence.
FL= gb:AK068917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3157011/11proline-rich family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31550Os.10786.1.S1_at11/113+17940519..17953383Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain containing protein, expressed
LOC_Os03g31560OsAffx.18078.1.S1_at4/113+17959358..17966409hypothetical protein
LOC_Os03g31560Os.49923.1.S1_at3/113+17959358..17966409hypothetical protein
LOC_Os03g31570Os.7167.1.S1_at11/113+17971044..17975559proline-rich family protein, putative, expressed
LOC_Os03g31594Os.6505.1.S1_at11/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31594OsAffx.3382.1.S1_at11/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31594OsAffx.9818.1.S1_x_at1/113+17981642..17996775jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7167.1.S1_at--124--3611Chr03:17975062..17975086 (25 bp)
CATTGTCTCAAGACCTTGCTACGGA
LOC_Os03g31570
Os.7167.1.S1_at--1134--7931Chr03:17975084..17975108 (25 bp)
GGATAGCTACTATTCTACCTTCCAC
LOC_Os03g31570
Os.7167.1.S1_at--712--8971Chr03:17975182..17975206 (25 bp)
TGAAACAACTGGTCTCATCGCCTGA
LOC_Os03g31570
Os.7167.1.S1_at--691--8591Chr03:17975191..17975215 (25 bp)
TGGTCTCATCGCCTGATTTCAACAG
LOC_Os03g31570
Os.7167.1.S1_at--1039--1031Chr03:17975214..17975238 (25 bp)
AGGTGGGCACTAGCAAACGTGGACA
LOC_Os03g31570
Os.7167.1.S1_at--1127--6691Chr03:17975303..17975327 (25 bp)
GTTCGGACTGTTTTAAGCTGTGTGT
LOC_Os03g31570
Os.7167.1.S1_at--781--9791Chr03:17975316..17975340 (25 bp)
TAAGCTGTGTGTGATATCTTCCATC
LOC_Os03g31570
Os.7167.1.S1_at--563--5891Chr03:17975376..17975400 (25 bp)
GAGCTGTATATCAGTTTTTCTTCCT
LOC_Os03g31570
Os.7167.1.S1_at--1139--1091Chr03:17975404..17975428 (25 bp)
AGTGGTATCTTCAGTGTGCTTGCAG
LOC_Os03g31570
Os.7167.1.S1_at--550--7311Chr03:17975419..17975443 (25 bp)
GTGCTTGCAGCGGTAGGTATTCAAT
LOC_Os03g31570
Os.7167.1.S1_at--1026--1871Chr03:17975520..17975544 (25 bp)
ACGATGGCGTATTTACTTTTGTGGA
LOC_Os03g31570
Target Sequence 
CATTGTCTCAAGACCTTGCTACGGATAGCTACTATTCTACCTTCCACACTAACCCTGAGCGGAAAAAGTTTTCAGAGGAG
GAATATGCAGCATTCACTAGAGAAGAGACACATAAAGCTATGAAACAACTGGTCTCATCGCCTGATTTCAACAGGTGGGC
ACTAGCAAACGTGGACAGGATATCTGTGACTCCTCCACAAAGAACACCCCAAAATAGCATGAGCCAGCAGCGGAAACGTT
TGTTCGGACTGTTTTAAGCTGTGTGTGATATCTTCCATCTAGTAATCTGGTTTCAATTGCCAATCAATAGATTTGAGCTG
TATATCAGTTTTTCTTCCTGGTAGTGGTATCTTCAGTGTGCTTGCAGCGGTAGGTATTCAATGTATATGAATTGAGTGGT
AGCTAGCAGCTGTAACAATGGTGTATTTGCTTGTGGAAGCGAATCTGTANTAGNNGNAACGATGGCGTATTTACTTTTGT
GGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis