Browse Element(s) Details


OsAffx.30393.1.S1_at

Description tigr:9638.m01059
TID=OsAffx.30393.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g117702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11740NANA10+6257441..6259614hypothetical protein
LOC_Os10g11750Os.46860.2.S1_at11/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11750Os.46860.2.S1_x_at11/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11750Os.46860.1.S1_at10/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11770OsAffx.30393.1.S1_at2/1110+6277934..6278308hypothetical protein
LOC_Os10g11780Os.49923.1.S1_at1/1110+6279355..6282068hypothetical protein
LOC_Os10g11794OsAffx.31892.2.S1_x_at11/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.31892.2.S1_at11/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.7216.1.S1_at2/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.24431.1.S1_at2/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.16438.1.S1_at1/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.31892.5.S1_x_at1/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30393.1.S1_at--1004--8531Chr10:6277999..6278023 (25 bp)
TGGAGCAGCCTGAAGGACCTCCGTT
LOC_Os10g11770
OsAffx.30393.1.S1_at--949--4611Chr10:6277954..6277978 (25 bp)
GCGAGGTCTATGACGAGCTCCATGA
LOC_Os10g11770
OsAffx.30393.1.S1_at--201--5971Chr10:6277481..6277950 (25 bp)
GAGAAGTGCGCAACTACATTCCGTC
NONE
OsAffx.30393.1.S1_at--949--5831Chr10:6277379..6277403 (25 bp)
GACCACTCTTCAAGGCAGCAAGCGA
NONE
OsAffx.30393.1.S1_at--382--5911Chr10:6277356..6277380 (25 bp)
GAGCTTGACCTCGACAGTATAGTGC
NONE
OsAffx.30393.1.S1_at--919--2691Chr10:6277100..6277325 (25 bp)
AAGCTAGAGGCCCAAGGATGCCTGT
NONE
OsAffx.30393.1.S1_at--922--6351Chr10:6277084..6277108 (25 bp)
GATGCCTGTGACGAGCTGGACAACA
NONE
OsAffx.30393.1.S1_at--585--4111Chr10:6277043..6277067 (25 bp)
CGAACGCGTCGATGGATGAGCTTGA
NONE
OsAffx.30393.1.S1_at--593--1491Chr10:6276989..6277013 (25 bp)
AGCACGCCCGGACGAACTTGGAAGC
NONE
OsAffx.30393.1.S1_at--759--3511Chr10:6276827..6276851 (25 bp)
CATGACGAGCTTGTGGAGCCAGCGT
NONE
OsAffx.30393.1.S1_at--103--8931Chr10:6276783..6276807 (25 bp)
TGACCAGCCTGACCTCGTGTATGAC
NONE
Target Sequence 
TGGAGCAGCCTGAAGGACCTCCGTTGCCAGATCCGGCGGCTGGCAGCGAGGTCTATGACGAGCTCCATGAGGGGAGAAGT
GCGCAACTACATTCCGTCAGTAGTTCCGTCTCCTCACCCCATCCTACACACATGTCTTCTTCCTCCTGCACTCTGCCAGT
CTGCCTCGTATGGCCGACCACTCTTCAAGGCAGCAAGCGAGCTTGACCTCGACAGTATAGTGCTGAGTGGGTTGGAGGGT
GGCTGGATCAGGCAAGCTAGAGGCCCAAGGATGCCTGTGACGAGCTGGACAACAACGCTTCGGGCGGGCTCGAACGCGTC
GATGGATGAGCTTGAGGATGACGCATCAGGGGGAGACCAGGGGCAGCACGCCCGGACGAACTTGGAAGCGGCGCGGCCGC
GGAGGGTTGGCGTACATGACGAGCTTGTGGAGCCAGCGTCCTGCGTTCGCACCATGGCTGACCAGCCTGACCTCGTGTAT
GAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis