Browse Element(s) Details


OsAffx.18229.1.S1_at

Description gb:NM_195319.1
DB_XREF= gi:37531997
TID=OsAffx.18229.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0005F01.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1172011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11680NANA10+6215518..6221203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11690NANA10+6222373..6229043retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11696Os.45173.1.S1_x_at1/1110+6231780..6234123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11702NANA10+6234388..6238815retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11710Os.47999.3.S1_x_at11/1110+6244035..6244523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11710OsAffx.20691.1.S1_x_at1/1110+6244035..6244523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11720OsAffx.18229.1.S1_x_at11/1110+6245410..6246039hypothetical protein
LOC_Os10g11720OsAffx.18229.1.S1_at11/1110+6245410..6246039hypothetical protein
LOC_Os10g11730Os.46275.1.S1_at10/1110+6249730..6251992expressed protein
LOC_Os10g11740NANA10+6257441..6259614hypothetical protein
LOC_Os10g11750Os.46860.2.S1_at11/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11750Os.46860.2.S1_x_at11/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11750Os.46860.1.S1_at10/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18229.1.S1_at--312--4571Chr10:6245934..6245958 (25 bp)
GCGCGCCAGGTAGAGGCATCTGGTA
LOC_Os10g11720
OsAffx.18229.1.S1_at--5--9271Chr10:6245758..6245782 (25 bp)
TCCTCCAATGACTGGAAATGAGAAT
LOC_Os10g11720
OsAffx.18229.1.S1_at--688--611Chr10:6245636..6245660 (25 bp)
ATGCGGCCAAGCCTTATCCTTCTGA
LOC_Os10g11720
OsAffx.18229.1.S1_at--1119--4371Chr10:6245630..6245654 (25 bp)
CCAAGCCTTATCCTTCTGACATAAA
LOC_Os10g11720
OsAffx.18229.1.S1_at--892--2651Chr10:6245628..6245652 (25 bp)
AAGCCTTATCCTTCTGACATAAATC
LOC_Os10g11720
OsAffx.18229.1.S1_at--915--10131Chr10:6245622..6245646 (25 bp)
TATCCTTCTGACATAAATCACGGGC
LOC_Os10g11720
OsAffx.18229.1.S1_at--123--3651Chr10:6245618..6245642 (25 bp)
CTTCTGACATAAATCACGGGCTGAC
LOC_Os10g11720
OsAffx.18229.1.S1_at--507--3851Chr10:6245615..6245639 (25 bp)
CTGACATAAATCACGGGCTGACAAA
LOC_Os10g11720
OsAffx.18229.1.S1_at--1114--4271Chr10:6245486..6245510 (25 bp)
CCTGCAAAGACCGTGGAATTCTGTC
LOC_Os10g11720
OsAffx.18229.1.S1_at--123--1391Chr10:6245479..6245503 (25 bp)
AGACCGTGGAATTCTGTCACATCCT
LOC_Os10g11720
OsAffx.18229.1.S1_at--497--4251Chr10:6245476..6245500 (25 bp)
CCGTGGAATTCTGTCACATCCTGAT
LOC_Os10g11720
Target Sequence 
GCGCGCCAGGTAGAGGCATCTGGTACTCAAGGTTCTACTACTATGCCATCCAGCTTCGTCGACAACAACGTCAACACCAG
CTTCAGCCAAGCACTCCCTACTTCAACAATGCTGGTATGGACTCATGTCGGCGAAATTGTCTTCCCGGTTTACACCACGA
TGCCGATCTCAACCGGTCCTCCAATGACTGGAAATGAGAATGCAGTGGCTACGAACCAAGGCAACTCCATGTCGAAAAAT
CCACCCGTCGAAATGGAGAACGGATTACCGACTACACCCAAGCTCGGGAAGGATTCTGATGCGGCCAAGCCTTATCCTTC
TGACATAAATCACGGGCTGACAAAGATGACTTCCGAAGCCACCAGGTCTTGGTGTCCTATCCACAAAACCAAGAAACACA
CCCTTCAAGATTGCTGGGTTTTTCTCAACGTCCGTGCTGAAATTCGCGCCTGCAAAGACCGTGGAATTCTGTCACATCCT
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis