Browse Element(s) Details


Os.46314.1.S1_x_at

Description gb:AK064474.1
DB_XREF= gi:32974492
TID=Os.46314.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1080D07.23 (B1080D07.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-H10, full insert sequence.
FL= gb:AK064474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g086606/11retrotransposon, putative, centromere-specific
LOC_Os09g038702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g043201/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08610Os.49162.1.S1_at11/115+4688614..4693391Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g08620OsAffx.26788.1.S1_at11/115+4700845..4701480expressed protein
LOC_Os05g08640Os.17173.1.S1_at10/115+4713076..4715065Transferase family protein, expressed
LOC_Os05g08640OsAffx.9719.1.S1_x_at2/115+4713076..4715065Transferase family protein, expressed
LOC_Os05g08650OsAffx.25367.1.S1_at1/115+4715340..4717375retrotransposon, putative, centromere-specific
LOC_Os05g08650Os.19099.1.S1_x_at1/115+4715340..4717375retrotransposon, putative, centromere-specific
LOC_Os05g08660Os.46314.1.S1_x_at6/115+4718336..4721254retrotransposon, putative, centromere-specific
LOC_Os05g08660Os.19099.1.S1_x_at2/115+4718336..4721254retrotransposon, putative, centromere-specific
LOC_Os05g08670OsAffx.1319.1.S1_at9/115+4728055..4730970transposon protein, putative, Mariner sub-class
LOC_Os05g08680NANA5+4731665..4732777S-antigen protein precursor, putative
LOC_Os05g08694NANA5+4734726..4742748retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46314.1.S1_x_at--265--4896Chr12:12105803..12105827 (25 bp)
GCTTTCGTTTCTCGGTGAGTTTTCT
NONE
Os.46314.1.S1_x_at--213--10636Chr12:12105806..12105830 (25 bp)
TTCGTTTCTCGGTGAGTTTTCTTCT
NONE
Os.46314.1.S1_x_at--359--9396Chr12:12105807..12105831 (25 bp)
TCGTTTCTCGGTGAGTTTTCTTCTA
NONE
Os.46314.1.S1_x_at--172--10317Chr12:12105810..12105834 (25 bp)
TTTCTCGGTGAGTTTTCTTCTACCT
NONE
Os.46314.1.S1_x_at--183--10557Chr12:12105811..12105835 (25 bp)
TTCTCGGTGAGTTTTCTTCTACCTA
NONE
Os.46314.1.S1_x_at--438--9517Chr12:12105812..12105836 (25 bp)
TCTCGGTGAGTTTTCTTCTACCTAT
NONE
Os.46314.1.S1_x_at--33--3797Chr12:12105813..12105837 (25 bp)
CTCGGTGAGTTTTCTTCTACCTATA
NONE
Os.46314.1.S1_x_at--302--9437Chr12:12105814..12105838 (25 bp)
TCGGTGAGTTTTCTTCTACCTATAA
NONE
Os.46314.1.S1_x_at--984--7378Chr12:12105817..12105841 (25 bp)
GTGAGTTTTCTTCTACCTATAACCA
NONE
Os.46314.1.S1_x_at--1157--8878Chr12:12105818..12105842 (25 bp)
TGAGTTTTCTTCTACCTATAACCAG
NONE
Os.46314.1.S1_x_at--795--6078Chr12:12105819..12105843 (25 bp)
GAGTTTTCTTCTACCTATAACCAGA
NONE
Target Sequence 
GCTTTCGTTTCTCGGTGAGTTTTCTTCTACCTATAACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46314.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis