Browse Element(s) Details


Os.4636.1.S2_at

Description gb:AK103072.1
DB_XREF= gi:32988281
TID=Os.4636.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4636 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-1,3-glucanase (P0489B03.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118B10, full insert sequence.
FL= gb:AK070331.1 gb:AK103072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6417011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64130NANA1+37572420..37573484hypothetical protein
LOC_Os01g64140NANA1+37575693..37576265hypothetical protein
LOC_Os01g64150Os.47463.1.S1_x_at3/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64150Os.14491.2.S1_x_at2/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64160NANA1+37591411..37594743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64170Os.4636.1.S2_at11/111+37596660..37601550Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g64170Os.4636.1.S1_a_at11/111+37596660..37601550Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g64180Os.18461.1.S1_at11/111+37602604..37604249expressed protein
LOC_Os01g64190Os.37413.1.S2_at11/111+37605840..37607296expressed protein
LOC_Os01g64190Os.37413.1.S1_at11/111+37605840..37607296expressed protein
LOC_Os01g64200OsAffx.24056.2.S1_at11/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64200OsAffx.24056.1.S1_x_at6/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64210OsAffx.23911.1.S1_at11/111+37615221..37615706hypothetical protein
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4636.1.S2_at--1038--10131Chr01:37600965..37600989 (25 bp)
TATCCCTGTCCCTGTAGTGGTATAT
LOC_Os01g64170
Os.4636.1.S2_at--486--10371Chr01:37600990..37601014 (25 bp)
TTTTTTCCTGTTTGGCATCTATGAA
LOC_Os01g64170
Os.4636.1.S2_at--724--10171Chr01:37601021..37601045 (25 bp)
TATACTACCTCGCTAGAGCAAGATT
LOC_Os01g64170
Os.4636.1.S2_at--10--6751Chr01:37601059..37601083 (25 bp)
GTTCATGCTTGTCCAGACTCCAGAG
LOC_Os01g64170
Os.4636.1.S2_at--1109--6031Chr01:37601194..37601218 (25 bp)
GAGATCTTTACTATAGTCGCACTAA
LOC_Os01g64170
Os.4636.1.S2_at--823--9831Chr01:37601242..37601266 (25 bp)
TAAACCTGGTGTACTAGCTAGCTTG
LOC_Os01g64170
Os.4636.1.S2_at--376--1571Chr01:37601257..37601281 (25 bp)
AGCTAGCTTGACCATGTCCTTGTTA
LOC_Os01g64170
Os.4636.1.S2_at--281--7271Chr01:37601272..37601296 (25 bp)
GTCCTTGTTATTGCTAATCGGTCAG
LOC_Os01g64170
Os.4636.1.S2_at--1076--2591Chr01:37601287..37601311 (25 bp)
AATCGGTCAGTCACGTCACTTTGAA
LOC_Os01g64170
Os.4636.1.S2_at--37--5291Chr01:37601318..37601342 (25 bp)
GAAGGCTCTCAATTCTGGACGAAGT
LOC_Os01g64170
Os.4636.1.S2_at--960--5771Chr01:37601335..37601359 (25 bp)
GACGAAGTGGCTGTAACTGTCTTTA
LOC_Os01g64170
Target Sequence 
TATCCCTGTCCCTGTAGTGGTATATTTTTTTCCTGTTTGGCATCTATGAAAGTTTTTATACTACCTCGCTAGAGCAAGAT
TACAAGAAGCATGCGTTCATGCTTGTCCAGACTCCAGAGAGAATGCATTATGCAATTTTCACTTCTAAGTTCTATAGCTT
CTATCAACTCATTATGCTTGTTTTATGATGCAGGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTAC
TATAGTCGCACTAACTGCNGGAGGAGGAAGCTGTTAGATAAACCTGGTGTACTAGCTAGCTTGACCATGTCCTTGTTATT
GCTAATCGGTCAGTCACGTCACTTTGAAAGAACTGAAGGCTCTCAATTCTGGACGAAGTGGCTGTAACTGTCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4636.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis