Browse Element(s) Details


OsAffx.21722.1.S1_at

Description gb:NM_190709.1
DB_XREF= gi:34908501
GEN=P0679C12.21
TID=OsAffx.21722.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0679C12.21 (P0679C12.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6422010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64160NANA1+37591411..37594743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64170Os.4636.1.S2_at11/111+37596660..37601550Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g64170Os.4636.1.S1_a_at11/111+37596660..37601550Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g64180Os.18461.1.S1_at11/111+37602604..37604249expressed protein
LOC_Os01g64190Os.37413.1.S2_at11/111+37605840..37607296expressed protein
LOC_Os01g64190Os.37413.1.S1_at11/111+37605840..37607296expressed protein
LOC_Os01g64200OsAffx.24056.2.S1_at11/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64200OsAffx.24056.1.S1_x_at6/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64210OsAffx.23911.1.S1_at11/111+37615221..37615706hypothetical protein
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g64262Os.26850.1.A1_s_at11/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64262Os.45986.1.A1_at5/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64270Os.26570.1.S1_s_at11/111+37642140..37643107expressed protein
LOC_Os01g64270Os.37904.1.S1_at11/111+37642140..37643107expressed protein
LOC_Os01g64280Os.42377.1.S1_x_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64280Os.20739.1.S1_s_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64290Os.30881.3.S1_x_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.3.S1_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.1.S1_at10/111+37648744..37650351expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21722.1.S1_at--148--8831Chr01:37621633..37621657 (25 bp)
TGATGTGAAAGAAAATGTTCCTGTT
LOC_Os01g64220
OsAffx.21722.1.S1_at--711--5492Chr02:528145..528286 (25 bp)
GAAAATGTTCCTGTTAAACCCATTG
NONE
OsAffx.21722.1.S1_at--101--731Chr01:37621619..37621643 (25 bp)
ATGTTCCTGTTAAACCCATTGAGAG
LOC_Os01g64220
OsAffx.21722.1.S1_at--504--6631Chr01:37621617..37621641 (25 bp)
GTTCCTGTTAAACCCATTGAGAGAA
LOC_Os01g64220
OsAffx.21722.1.S1_at--384--3651Chr01:37621613..37621637 (25 bp)
CTGTTAAACCCATTGAGAGAAGCTT
LOC_Os01g64220
OsAffx.21722.1.S1_at--927--2371Chr01:37621608..37621632 (25 bp)
AAACCCATTGAGAGAAGCTTTCTAG
LOC_Os01g64220
OsAffx.21722.1.S1_at--894--1811Chr01:37621606..37621630 (25 bp)
ACCCATTGAGAGAAGCTTTCTAGAT
LOC_Os01g64220
OsAffx.21722.1.S1_at--594--5392Chr02:528234..528258 (25 bp)
GAAGCTTTCTAGATATGCTTGATTC
NONE
OsAffx.21722.1.S1_at--537--6571Chr01:37621236..37621599 (25 bp)
GATTCTTCAATTGATGTTAATCTGA
LOC_Os01g64220
OsAffx.21722.1.S1_at--291--9551NONE
TCTTCTCCAAAGATCATTCCAAAGG
NONE
OsAffx.21722.1.S1_at--546--10572Chr02:526921..527200 (25 bp)
TTCTCCAAAGATCATTCCAAAGGAC
NONE
Target Sequence 
TGATGTGAAAGAAAATGTTCCTGTTAAACCCATTGAGAGAAGCTTTCTAGATATGCTTGATTCTTCAATTGATGTTAATC
TGAATGAAGATGACAAGAGTAAATTCAATGATGATAGTTCAATGGTAAAAGACCAGAATACCTGTAATGATAATGCAATT
GGAAATGAGAAAACTCCTATGAAAATATCATCTTCTCCAAAGATCATTCCAAAGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis